GE213359

Overview
NameGE213359
Unique NameGE213359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:962..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.346e-18
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVG 307
            ++GL   GVGWVVWR K D+  +LVF ++YLG + PTF+LNFS+   QI+ QYY F+R G  GY  + + C+ +   +   ++K G F+I+    G
Sbjct:  274 KFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTG 369          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA----LI*GLQKTGRFEILS 295
            ++GL   G+GWV+WR +  L DEL F + YLG  + TF LNFS+   Q++ QY+ F+ LG  GY+   +N +  ARA    L+   +  G FEI+S
Sbjct:  318 KFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNFSRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSFELLNSSKLPGCFEIVS 413          
The following BLAST results are available for this feature:
BLAST of GE213359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GADA_DICDI6.346e-1842.71Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCE_YEAST2.495e-1441.67Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank description225 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.