GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.074e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  171 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.074e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.074e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.074e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.074e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 2.074e-28
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.034e-28
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR+WLK NVS +VA S RIIYGGSV G  CKEL AQPD+DGFLVGGASLKPEFIDII +
Sbjct:  171 GTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFLVGGASLKPEFIDIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 6.034e-28
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NV+  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK NVS  VA  TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_RABIT2.074e-2880.26Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_PONAB2.074e-2880.26Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR2.074e-2880.26Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN2.074e-2880.26Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_GORGO2.074e-2880.26Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_CANFA2.074e-2880.26Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_XENTR6.034e-2877.63Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_MOUSE6.034e-2878.95Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_BOVIN7.880e-2878.95Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_RAT1.756e-2778.95Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.