GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLU (Triosephosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLI (Triosephosphate isomerase OS=Escherichia coli (strain K12) GN=tpiA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECOHS (Triosephosphate isomerase OS=Escherichia coli O9:H4 (strain HS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECODH (Triosephosphate isomerase OS=Escherichia coli (strain K12 / DH10B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECO8A (Triosephosphate isomerase OS=Escherichia coli O8 (strain IAI1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECO7I (Triosephosphate isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_ECOLU9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O17:... [more]
TPIS_ECOLI9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLC9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL69.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O6 G... [more]
TPIS_ECOL59.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK19.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O1:K... [more]
TPIS_ECOHS9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O9:H... [more]
TPIS_ECODH9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECO8A9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O8 (... [more]
TPIS_ECO7I9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O7:K... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.