GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.108e-27
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK +VS  VA STRIIYGGSV G NCKELA+Q DVDGFLVGGASLKPEF+DII +
Sbjct:  171 GTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.138e-26
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  238 GTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKK 319          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.941e-26
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  170 GTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.941e-26
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  170 GTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.535e-26
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR+W+K NVS  VA S RIIYGGSV G  C+ELA QPD+DGFLVGGASLKPEFI+II +
Sbjct:  171 GTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLKPEFIEIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.535e-26
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK A+P QAQEVHA LRKW  +NVSA+V+A+ RI YGGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+ +
Sbjct:  170 GTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIVNA 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.535e-26
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK A+P QAQEVH +LR WL+ NVS  VA S RIIYGGSV G NCKELAAQ DVDGFLVGGASLKPEF+DII +
Sbjct:  171 GTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLKPEFVDIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.647e-26
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = -1
Query:  312 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 527
            GTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:  170 GTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 5.647e-26
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG+ ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  170 GTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.376e-26
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR W + N+S EV+ S RIIYGGSV  ANC+ELA+Q DVDGFLVGGASLKPEFIDII +
Sbjct:  171 GTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLKPEFIDIINA 246          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_CHICK5.108e-2777.63Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIC_SPIOL1.138e-2673.17Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIS_DROYA1.941e-2675.00Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI1.941e-2675.00Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_XENLA2.535e-2673.68Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_CULTA2.535e-2672.37Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPISA_DANRE2.535e-2676.32Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_LATCH5.647e-2675.00Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_DROME5.647e-2673.68Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_ORYLA7.376e-2673.68Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.