GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 527
            GTGK AT  QAQEVHA +R  + +    + A   RI YGGSV  +N  EL A PD+DG L+GGASL   +F+ I+++A
Sbjct:  167 GTGKTATKEQAQEVHALIRAKVTELYGQKAADHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLNADDFMAIVEAA 244          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTB (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  291 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATV 527
            GTGKVA P   QE HA  RK +    S ++A  T I+YGGSV   N + L+  PDV+G LVGGASL  E F+ II+   +
Sbjct:  194 GTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDI 273          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT2 (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  291 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATV 527
            GTGKVA P   QE HA  RK +    S ++A  T I+YGGSV   N + L+  PDV+G LVGGASL  E F+ II+   +
Sbjct:  194 GTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDI 273          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 527
            GTGK ++   A EV A +RK + + VS   A + RI YGGSV   N KE  AQPD+DG LVGGASL+P  F+ ++++
Sbjct:  173 GTGKSSSAEDANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPGNIKEYMAQPDIDGALVGGASLEPASFLGLLEA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAW (Triosephosphate isomerase OS=Staphylococcus aureus (strain MW2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAU (Triosephosphate isomerase OS=Staphylococcus aureus GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAT (Triosephosphate isomerase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAS (Triosephosphate isomerase OS=Staphylococcus aureus (strain MSSA476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAR (Triosephosphate isomerase OS=Staphylococcus aureus (strain MRSA252) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAN (Triosephosphate isomerase OS=Staphylococcus aureus (strain N315) GN=tpiA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_CHLTE3.554e-1250.00Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_CHLTB3.554e-1248.75Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLT23.554e-1248.75Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_BACCN3.554e-1249.35Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_STAAW4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAU4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAT4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAS4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAR4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAN4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.