GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.376e-26
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK A+P QAQEVH +LR+WLK NVS  VA S RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  171 GTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 9.633e-26
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK +V   VA STRIIYGGSV GA CKELA+QPDVDGF V GASLKPEF+DII +
Sbjct:  172 GTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.258e-25
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:  173 GTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.643e-25
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  230 GTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.803e-25
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVAT  QAQEVH+ +RKWLKD +SAE A +TRIIYGGSV+  NCK+LA + D+DGFLVGGASLKP F+DI+ +
Sbjct:  172 GTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAFVDIVNA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.803e-25
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGKVA+P QAQEVHA +R WLK NVSA+VA++ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S T KK
Sbjct:  214 GTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKK 295          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.660e-25
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  171 GTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.781e-25
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  172 GTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.244e-25
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  231 GTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.817e-24
Identity = 51/76 (67.11%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVATP QA++VH  +R WL +NVS +VAASTRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:  166 GTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPISB_DANRE7.376e-2675.00Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_PIG9.633e-2675.00Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_STELP1.258e-2574.39Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_FRAAN1.643e-2570.73Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_EMENI2.803e-2569.74Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIC_SECCE2.803e-2570.73Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_NEUCR3.660e-2571.05Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_PARBA4.781e-2569.74Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIC_ARATH6.244e-2570.73Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_GRAVE1.817e-2467.11Triosephosphate isomerase, cytosolic (Fragment) OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.