GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_THET8 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tpiA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK ATP  A+ +H  +RK L +      A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:  172 GTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LACS1 (Triosephosphate isomerase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTGK AT  QA+E+ A +RK + D     VA   R+ YGGSV  AN KEL A+ ++DG LVGGASL P+
Sbjct:  173 GTGKTATADQAEEICAVVRKTVADLYDETVADKVRVQYGGSVKPANVKELMAKENIDGGLVGGASLVPD 241          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTA (Triosephosphate isomerase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  291 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATV 527
            GTGKVA P   QE HA  RK +    S ++A  T I+YGGSV   + + L+  PDV+G LVGGASL  E F+ II+   +
Sbjct:  194 GTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADDARSLSLCPDVNGLLVGGASLSSENFLSIIQQVDI 273          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACC1 (Triosephosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 527
            GTGK ++ A A EV A +RK + + VS   A + RI YGGSV   N KE  AQ D+DG LVGGASL+P  F+ ++++
Sbjct:  173 GTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEPASFLGLLEA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STRCO (Triosephosphate isomerase OS=Streptomyces coelicolor GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 527
            GTGKV     AQEV A +R  L +  S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I++
Sbjct:  179 GTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVR 254          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAB (Triosephosphate isomerase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+   +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCTFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SOLUE (Triosephosphate isomerase OS=Solibacter usitatus (strain Ellin6076) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = -1
Query:  324 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 527
            GTGK ATP  A + H  +R  +++    E A + RI+YGGSV   N K L  QP++DG LVGGA+L P
Sbjct:  173 GTGKTATPEIAADTHRAIRGQVREKFGKEAADAVRILYGGSVKPDNAKVLMGQPEIDGVLVGGAALDP 240          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  330 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 527
            GTG+VA+ A AQEV   +RK L    S +VA + R++YGGS+N  N  ++ AQ DVDG LVGGASL
Sbjct:  178 GTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDVDGGLVGGASL 243          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 527
            GTG  ATPA AQ +HA +R  L        A +  I YGGSV   N  EL AQPD+DG LVGGASLK  +FI I++
Sbjct:  173 GTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGSVKPDNVDELMAQPDIDGALVGGASLKAADFIRIVR 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BORAP (Triosephosphate isomerase OS=Borrelia afzelii (strain PKo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 527
            GTGK AT  +A+EVH  +R  +    S   + +  I YGGSVN +N KEL  +P++DG L+GGASLK E F+ II +
Sbjct:  175 GTGKTATKEEAEEVHKAIRLEIMKLYSKSASDNIIIQYGGSVNASNIKELMNEPNIDGALIGGASLKAESFLSIINN 251          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_THET81.034e-1147.44Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_LACS11.034e-1153.62Triosephosphate isomerase OS=Lactobacillus salivar... [more]
TPIS_CHLTA1.034e-1147.50Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_BACC11.034e-1149.35Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_STRCO1.350e-1151.32Triosephosphate isomerase OS=Streptomyces coelicol... [more]
TPIS_STAAB1.350e-1150.00Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_SOLUE1.350e-1148.53Triosephosphate isomerase OS=Solibacter usitatus (... [more]
TPIS_MYCLE1.350e-1154.55Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS_HERA21.350e-1152.63Triosephosphate isomerase OS=Herpetosiphon auranti... [more]
TPIS_BORAP1.350e-1148.05Triosephosphate isomerase OS=Borrelia afzelii (str... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.