GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK AT   A E  A +R+ +  N S E A + RI YGGSV   N K+  AQPD+DG LVGGASL  + F++++ +A
Sbjct:  173 GTGKSATEKDANEACAYVRQTVAANFSEEAAEAIRIQYGGSVKPGNIKDYMAQPDIDGALVGGASLDADSFLELVGAA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACLD (Triosephosphate isomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 527
            GTGK +T   A EV A +RK +        A S RI YGGSV  AN KE  A+ D+DG LVGGASL+P+ F+ ++++
Sbjct:  173 GTGKSSTAQDANEVCAHIRKTVASEFGQTAADSVRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLLEA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACC7 (Triosephosphate isomerase OS=Bacillus cereus (strain AH187) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = -1
Query:  324 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 527
            GTGK ++ A A EV A +RK + + VS   A + RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:  173 GTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACC0 (Triosephosphate isomerase OS=Bacillus cereus (strain AH820) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = -1
Query:  324 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 527
            GTGK ++ A A EV A +RK + + VS   A + RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:  173 GTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PROAC (Triosephosphate isomerase OS=Propionibacterium acnes GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTG+ AT   AQEV   +R+ +K+   A  A + RI YGGSV  AN  E+ A+PDVDG LVGGASLK
Sbjct:  180 GTGETATADDAQEVCQAIREAVKELYDAPTAEAVRIQYGGSVKPANVAEIMAKPDVDGALVGGASLK 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PARUW (Triosephosphate isomerase OS=Protochlamydia amoebophila (strain UWE25) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  306 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 527
            G G+ A P  AQE+H   RK +K+  S E+A    I YGGSVN +N   L  QPD+DG L+GGASL  E F++I+
Sbjct:  176 GNGQNAKPEGAQEIHQFCRKIIKEIFSEELAEQIVIQYGGSVNPSNAISLLKQPDIDGLLIGGASLSLETFVEIV 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTG+VA  A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:  178 GTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTG+VA  A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:  178 GTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTG+VA  A AQEV   +R  L    S ++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:  178 GTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  291 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATV 527
            GTG+ AT  QAQEVH  +R  +    + EVA + +IIYGGSV   N  EL A PD+DG L+GGASL    F+ I  S +V
Sbjct:  172 GTGRSATTGQAQEVHYHIRSLIA-RWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHSVSV 250          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_BACSK1.350e-1148.72Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS_BACLD1.350e-1148.05Triosephosphate isomerase OS=Bacillus licheniformi... [more]
TPIS_BACC71.350e-1154.41Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC01.350e-1154.41Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_PROAC1.764e-1155.22Triosephosphate isomerase OS=Propionibacterium acn... [more]
TPIS_PARUW1.764e-1149.33Triosephosphate isomerase OS=Protochlamydia amoebo... [more]
TPIS_MYCSS1.764e-1155.07Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK1.764e-1155.07Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ1.764e-1155.07Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_METCA1.764e-1150.00Triosephosphate isomerase OS=Methylococcus capsula... [more]

Pages

back to top
Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.