GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNV--SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGKVATPAQAQEVH  +RK +      + E+A S  I+YGGSV   N + L  + D+DG LVGGAS K
Sbjct:  174 GTGKVATPAQAQEVHFFIRKEIAGLFLGAKEIAESISILYGGSVKPDNIQTLLKEKDLDGGLVGGASQK 242          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBJ (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNV--SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGKVATPAQAQEVH  +RK +      + E+A S  I+YGGSV   N + L  + D+DG LVGGAS K
Sbjct:  174 GTGKVATPAQAQEVHFFIRKEIAGLFLGAKEIAESISILYGGSVKPDNIQTLLKEKDLDGGLVGGASQK 242          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ALISL (Triosephosphate isomerase OS=Aliivibrio salmonicida (strain LFI1238) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = -1
Query:  288 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 527
            GTGK AT   AQ +HA++R  + +  S EVA +  I YGGSV   N +   AQPD+DG LVGGA+L  +    I  A  K
Sbjct:  175 GTGKAATAEDAQRIHAQIRAHIAEK-SEEVAKNVVIQYGGSVKPENAEAYFAQPDIDGALVGGAALDAKSFAAIAKAAAK 253          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_LEPBL8.753e-1155.07Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_LEPBJ8.753e-1155.07Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_ALISL8.753e-1146.25Triosephosphate isomerase OS=Aliivibrio salmonicid... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.