GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.373e-24
Identity = 56/76 (73.68%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVA+P QAQEVH  LRKW K N  + V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEFIDI K+
Sbjct:  175 GTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.047e-24
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVAT  QAQEVHA +RKWL D +S E + +TRIIYGGSV+  NC+ELA + DVDGFLVGGASLKP F+DII +
Sbjct:  174 GTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLKPAFVDIINA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.016e-24
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVAT +QAQE H ++RK+L   VS +VA+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF+DII +
Sbjct:  173 GTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEFVDIINA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.178e-23
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = -1
Query:  306 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 527
            GTGKVATP QAQEVH  LRKW+ +N+  +VAA  RI+YGGSVN AN   L A+PD++GFLVGGASLKPEF DII
Sbjct:  174 GTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDII 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.009e-23
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQEVH +LR WLK N+S  VA ST IIYGGSV  A CKELA+QPDV  FL+ G SLKPEF+DII +
Sbjct:  153 GTGKTATPQQAQEVHKKLRGWLKSNISDAVAQSTGIIYGGSVTKATCKELASQPDVAAFLMSGVSLKPEFVDIINA 228          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.623e-23
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVATP QAQEVH  LRKW K N    V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEF +I K+
Sbjct:  175 GTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFTEICKA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 5.844e-23
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = -1
Query:  306 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 527
            GTGK ATP QAQEVHAE+RKW  + + A VA   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:  171 GTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVATP QAQE HA +R W+   + A+VA   RI+YGGSVNG N + L  Q DV+GFLVGGASLKPEF+DIIK+
Sbjct:  173 GTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATPAQAQEVH  +R W++ +V A +A   RI+YGGSV  +N K+L  QPDVDGFLVGGASLKP+FI II +
Sbjct:  173 GTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLKPDFITIINA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.102e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK ATP QAQ+VH  LR WL  NVS  V+ + RI YGGSV  AN KELA+  D+DGFLVGGASLKPEF++I+ +
Sbjct:  171 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 246          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_SCHJA2.373e-2473.68Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_ASPOR4.047e-2469.74Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_COPC79.016e-2468.42Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_LEIME1.178e-2370.27Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPISL_HUMAN2.009e-2369.74Putative triosephosphate isomerase-like protein LO... [more]
TPIS_SCHMA2.623e-2372.37Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_SCHPO5.844e-2367.57Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_TRYBB7.632e-2365.79Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TAESO2.221e-2264.47Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_BOMMO1.102e-2164.47Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.