GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.455e-21
Identity = 52/81 (64.20%), Postives = 61/81 (75.31%), Query Frame = -1
Query:  288 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVK 527
            GTGK ATP QAQEVH  +RKW+ +N+S EVA +TRI YGGSVN ANC ELA + D+DGFLVGGASL   +F  II S + K
Sbjct:  180 GTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIINSVSEK 260          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.455e-21
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -1
Query:  294 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAT 527
            GTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I   T
Sbjct:  176 GTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMIDILT 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.470e-21
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = -1
Query:  306 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 527
            GTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF  +I
Sbjct:  176 GTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFTTMI 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVKK 527
            GTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKSA  KK
Sbjct:  175 GTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  ATP  AQE H  +R+ L  ++ A+ A  TRI+YGGSVNG N  E   + DVDGFLVGGASLKPEF+DIIKS
Sbjct:  171 GTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADVDGFLVGGASLKPEFVDIIKS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGKVATP QAQEVH  LR+W++  +  ++AA  RI+YGGSV   N + L    D++GFLVGGASLKPEF++II++
Sbjct:  174 GTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 527
            GTGK ATP QAQ VH E+RK +KD    + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  171 GTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 527
            GTGK ATP QAQ VH E+RK +KD    + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  171 GTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTGK A+  QAQEVH  +R +LK+ VS  VA +TRIIYGGSV   N  EL  +PD+DGFLVGGASLKP+F+ II +
Sbjct:  170 GTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINA 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  ATP  A+E H  +R  L  ++ AE A  TRI+YGGSVNG N K+   + +VDGFLVGGASLKPEF+DIIKS
Sbjct:  171 GTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDFKDKANVDGFLVGGASLKPEFVDIIKS 246          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_ENTHI2.455e-2164.20Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPI1_GIALA2.455e-2162.82Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPI2_GIALA5.470e-2164.86Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_DICDI3.545e-2059.76Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_DEBHA3.545e-2061.84Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_TRYCR4.630e-2057.89Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_PLAFA1.032e-1962.34Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF71.032e-1962.34Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_CAEEL1.760e-1961.84Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_CANAL3.001e-1960.53Triosephosphate isomerase OS=Candida albicans GN=T... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.