GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.733e-19
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  ATP  AQE+H  +R++L   +  + A  TRI+YGGS NG N      +PDVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLKPEFVDIINS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK ATP QAQEVHA +R  +KD    EVA   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSA
Sbjct:  174 GTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSA 251          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.258e-17
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = -1
Query:  363 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 527
            GTGK ATP QAQEVH  LRKW  DNVSA+V+AS RI YGGSV  ANC+ELAA+PD
Sbjct:  152 GTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = -1
Query:  363 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 527
            GTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:  152 GTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 527
            GTGKVA+  QAQ+VHA +R WL +  S  VAA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A
Sbjct:  173 GTGKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGA 249          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_ZYGBA8.733e-1957.89Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_YEAST1.945e-1856.58Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_YARLI5.660e-1860.53Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_ASHGO5.660e-1856.58Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_KLULA9.655e-1856.58Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_CANGA1.261e-1755.26Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_CHLT31.647e-1761.54Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_AEDTO6.258e-1774.55Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CULPI3.106e-1670.91Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_PSYIN5.298e-1657.69Triosephosphate isomerase OS=Psychromonas ingraham... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.