GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            GTG  AT   AQ +H  +R++L   +S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  171 GTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PASMU (Triosephosphate isomerase OS=Pasteurella multocida GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 51/85 (60.00%), Postives = 56/85 (65.88%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWL--KDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +  KDN  AE      I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  180 GTGKSATPAQAQAVHAFIRGHIAKKDNAVAEQVI---IQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAKAKN 261          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 527
            GTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG LVGGASLK  FI++ +
Sbjct:  573 GTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELAR 647          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIN (Triosephosphate isomerase OS=Haemophilus influenzae GN=tpiA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  182 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  182 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIE (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittEE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  182 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  182 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.013e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -1
Query:  363 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 527
            GTGK ATP QAQEVHA LRKW  +NVSA+V+ + RI YGGSV  ANC+ELA +PD
Sbjct:  152 GTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKKDATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKAAAAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 527
            GTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA   K
Sbjct:  177 GTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSAAKGK 256          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_KLUMA5.298e-1653.95Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_PASMU1.180e-1560.00Triosephosphate isomerase OS=Pasteurella multocida... [more]
PGKT_THEMA1.180e-1556.00Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_HAEIN1.541e-1559.04Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIG1.541e-1559.04Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIE1.541e-1559.04Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI81.541e-1559.04Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_ANOME2.013e-1569.09Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_ERWT94.485e-1556.47Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_COLP34.485e-1554.32Triosephosphate isomerase OS=Colwellia psychreryth... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.