GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_AZOPC (Triosephosphate isomerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 527
            GTG+ ATP Q QE+H  +R+ L DN    +A  T I+YGGS N  N KEL   PDVDG L+GGASLK + F+ II++
Sbjct:  174 GTGRTATPVQVQEMHIFIRQILIDNYGQAIANETSILYGGSCNAGNAKELFINPDVDGGLIGGASLKVDTFLSIIEA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 527
            GTGK ATPA AQEVHA LRK L+   +AE A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+ +A
Sbjct:  172 GTGKTATPAMAQEVHAMLRKQLQAK-NAEAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = -1
Query:  357 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVD 527
            GTGK A+P QAQ+VHA LR WL  N S +VAAS RI YGGSV  AN KEL+A PD+D
Sbjct:  159 GTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGKVA+ A AQEV   +R  L +    EVAA  R++YGGSVN  N  EL AQPDVDG LVGGASLK
Sbjct:  178 GTGKVASAADAQEVCGAIRAELAELAGPEVAAQVRVLYGGSVNAKNVGELVAQPDVDGALVGGASLK 244          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  173 GTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  173 GTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHISS (Triosephosphate isomerase OS=Shigella sonnei (strain Ss046) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHIFL (Triosephosphate isomerase OS=Shigella flexneri GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHIF8 (Triosephosphate isomerase OS=Shigella flexneri serotype 5b (strain 8401) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHIDS (Triosephosphate isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_AZOPC4.485e-1553.25Triosephosphate isomerase OS=Azobacteroides pseudo... [more]
TPIS_JANMA5.858e-1556.41Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_HELVI5.858e-1566.67Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_NOCFA7.650e-1562.69Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_BACFR7.650e-1556.72Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN7.650e-1556.72Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_SHISS9.991e-1556.10Triosephosphate isomerase OS=Shigella sonnei (stra... [more]
TPIS_SHIFL9.991e-1556.10Triosephosphate isomerase OS=Shigella flexneri GN=... [more]
TPIS_SHIF89.991e-1556.10Triosephosphate isomerase OS=Shigella flexneri ser... [more]
TPIS_SHIDS9.991e-1556.10Triosephosphate isomerase OS=Shigella dysenteriae ... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.