GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHIBS (Triosephosphate isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHIB3 (Triosephosphate isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALNS (Triosephosphate isomerase OS=Salmonella newport (strain SL254) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_SHIBS9.991e-1556.10Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SHIB39.991e-1556.10Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SALTY9.991e-1554.12Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALTI9.991e-1554.12Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]
TPIS_SALSV9.991e-1554.12Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK9.991e-1554.12Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB9.991e-1554.12Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA9.991e-1554.12Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALNS9.991e-1554.12Triosephosphate isomerase OS=Salmonella newport (s... [more]
TPIS_SALHS9.991e-1554.12Triosephosphate isomerase OS=Salmonella heidelberg... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.