GE213349

Overview
NameGE213349
Unique NameGE213349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5473 contig Csv1_Contig5473:552..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213349 vs. ExPASy Swiss-Prot
Match: 1433B_SHEEP (14-3-3 protein beta/alpha (Fragments) OS=Ovis aries GN=YWHAB PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.730e-30
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 2
Query:   20 RYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGAD 355
            RYL+E  +G  ++    ++  AY+ A +I+  E+ PTHPIRLGLALNFSVFYYEILNSP            EAIAELDTL EESYKDSTLIMQLLRDNLTLWTS+ Q D  D
Sbjct:   92 RYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSP------------EAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD 191          
BLAST of GE213349 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.741e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 2
Query:  182 ILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIK 364
            ILNSPDRACNLAKQAFDEAI+ELD+LGEESYKDSTLIMQLL DNLTLWTSD  +DG DEIK
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNEDGGDEIK 61          
BLAST of GE213349 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.085e-18
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 2
Query:   20 RYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDM 337
            RYLAEF TG E+K A + +L AY+A                   A  FS+   EI+NSP+RA  +AKQA DEA AE+++ G E YKDS L+MQLL++NL LWTS++
Sbjct:  128 RYLAEFSTGTEKKAATDQSLMAYQAWP----------------CAQLFSLL--EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL 215          
The following BLAST results are available for this feature:
BLAST of GE213349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433B_SHEEP4.730e-3061.6114-3-3 protein beta/alpha (Fragments) OS=Ovis arie... [more]
1433X_MAIZE1.741e-2488.5214-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]
14338_ORYSJ7.085e-1848.11Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank description213 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.