GE213344

Overview
NameGE213344
Unique NameGE213344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.283e-51
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q NR RNGELYR I DT+GAFVQPA YEAFGLTVVEAMTCGLPTFATC+GGPAEII HG SGFHIDPYH D+AA+L+ DFF KCK +P+HW KIS  GL+RI E+Y
Sbjct:  634 YKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKLDPTHWDKISKAGLQRIEEKY 751          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.601e-51
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q NR RNGELYR IADTKGAFVQPA YEAFGLTVVEAMTCGLPTFATC+GGPAEII HG SGFHIDPYH D+AA+L+ +FF K K +PSHW KIS  GL+RI E+Y
Sbjct:  634 YKLNGQFRWISSQMNRVRNGELYRVIADTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQAGLQRIEEKY 751          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.315e-51
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL G  RWI+AQ NR RNGELYRYI DTKGAFVQPAFYEAFGLTV+E+MTCGLPT ATCHGGPAEII  G SG HIDPYH D+AA+++ +FF KCK +PS+W +IS GGL+RIYE+Y
Sbjct:  631 YKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIESMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFDKCKADPSYWDEISQGGLQRIYEKY 748          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.630e-50
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            Y L GQFRWIA+QTNR RNGELYRYI D  G F QPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIE G SGFHIDPYH DQ AE M +FF KC+E+P++W KIS GGL RI ERY
Sbjct:  581 YNLRGQFRWIASQTNRVRNGELYRYICDKGGIFAQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEDGVSGFHIDPYHADQ-AEKMTEFFVKCREDPNYWTKISAGGLLRIKERY 697          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.630e-50
Identity = 89/119 (74.79%), Postives = 100/119 (84.03%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +Y L+G  RWI+AQ NR RNGELYRYI DTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT +GGPAEII HG SG+HIDPY  D+A+ L+ DFF KC+  PSHW KIS GGL+RI E+Y
Sbjct:  638 QYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQGDKASALLVDFFDKCQAEPSHWSKISQGGLQRIEEKY 756          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.630e-50
Identity = 89/118 (75.42%), Postives = 99/118 (83.90%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL G  RWI+AQ NR RNGELYRYI DTKGAFVQPAFYEAFGLTV+EAMTCGLPT ATCHGGPAEII  G SG HIDPYH D+AA+++ +FF K   +PS+W KIS GGLKRIYE+Y
Sbjct:  630 YKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKSTADPSYWDKISQGGLKRIYEKY 747          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.056e-49
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +YKL G  RWI+AQ NR RNGELYRYI DTKG FVQPAFYEAFGLTV+EAMTCGLPT ATCHGGPAEII  G SG HIDPYH D+AA+++ +FF KCK++ ++W  IS GGL+RIYE+Y
Sbjct:  630 QYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGGLQRIYEKY 748          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.802e-49
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +Y L+G  RWI+AQ NR RNGELYRYI DTKGAFVQPAFYEAFGLTVVE+MTCGLPTFAT +GGPAEII +G SGFHIDPY  D+A+ L+ +FF KC+E+PSHW KIS GGL+RI E+Y
Sbjct:  638 QYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDPSHWTKISQGGLQRIEEKY 756          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.353e-49
Identity = 87/119 (73.11%), Postives = 100/119 (84.03%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +Y L G  RWI+AQ NR RNGELYRYI D KGAFVQPAFYEAFGLTV+EAMTCGLPTFAT +GGPAEII +G SG+HIDPY  D+A+ L+  FFGKC+E+PSHW KIS GGL+RI E+Y
Sbjct:  638 KYNLSGHIRWISAQMNRVRNGELYRYICDMKGAFVQPAFYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVNGVSGYHIDPYQNDKASALLVGFFGKCQEDPSHWNKISQGGLQRIEEKY 756          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.846e-49
Identity = 90/119 (75.63%), Postives = 101/119 (84.87%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQ-PAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q NR RNGELYRYIADTKG     PA YEAFGLTVVE+MTCGLPTFATC GGPAEII HG SGFHIDPYH +QAA+L+ DFF K K +PSHW KIS GGL+RI+E+Y
Sbjct:  631 YKLNGQFRWISSQMNRVRNGELYRYIADTKGGLCAGPAIYEAFGLTVVESMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGEQAAQLLVDFFEKTKADPSHWAKISLGGLQRIHEKY 749          
The following BLAST results are available for this feature:
BLAST of GE213344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SUSY_SOYBN3.283e-5177.12Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_PHAAU5.601e-5177.97Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUS1_MAIZE7.315e-5174.58Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUSY_BETVU3.630e-5078.81Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUS2_MAIZE3.630e-5074.79Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS1_HORVU3.630e-5075.42Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUS2_ORYSJ1.056e-4972.27Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS1_ORYSJ1.802e-4973.95Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS2_HORVU2.353e-4973.11Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUSY_ALNGL6.846e-4975.63Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank description206 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.