GE213344

Overview
NameGE213344
Unique NameGE213344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.992e-48
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q NR RNGELYR I DTKGAFVQPA YEAFGLTVVEAM  GLPTFAT +GGPAEII HG SGFHIDPYH D+AA+L+ +FF K K +PSHW KIS GGL+RI E+Y
Sbjct:  634 YKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISQGGLQRIEEKY 751          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.796e-48
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q NR RNGELYR I DTKGAFVQPA YEAFGLTVVEAM  GLPTFAT +GGPAEII HG SGFHIDPYH D+AA+L+ +FF K K +PSHW KIS GGL+RI E+Y
Sbjct:  634 YKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISLGGLQRIEEKY 751          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 7.570e-48
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +Y L+G  RWI+AQ NR RNGELYRYI D +GAFVQPA YEAFGLTV+EAMTCGLPTFAT +GGPAEII HG SG+HIDPY  D+A+ L+ +FF KC+E+P+HW KIS GGL+RI E+Y
Sbjct:  638 QYNLNGHIRWISAQMNRVRNGELYRYICDMRGAFVQPALYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQNDKASALLVEFFEKCQEDPNHWIKISQGGLQRIEEKY 756          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_SACOF (Sucrose synthase (Fragment) OS=Saccharum officinarum GN=SUS1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 63/118 (53.39%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YK  G  R I+AQ NR RNGELY+YI DTKGAFVQPA YEAF L                   P EII  G SG HIDPYH D+ A+++ +FF KC  +PS+W +IS GG +RIYE+Y
Sbjct:   61 YKFKGHIRLISAQMNRVRNGELYQYICDTKGAFVQPA-YEAFRLDCDRVHEVRSAKDRDLPWRPCEIIADGVSGLHIDPYHSDKDADILVNFFDKCNADPSYWDEISQGG-QRIYEKY 176          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS_VICFA (Sucrose-phosphate synthase OS=Vicia faba GN=SPS PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   83 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            ++YR  A TKG F+ PAF E FGLT++EA   GLP  AT +GGP +I     +G  IDP H +++   +AD   K   N   W K    GLK I+
Sbjct:  560 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLIDP-HDEKS---IADALLKLVSNKQLWAKCRQNGLKNIH 650          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS_SPIOL (Sucrose-phosphate synthase OS=Spinacia oleracea GN=SPS1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 2
Query:   83 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            ++YR  A TKG F+ PAF E FGLT++EA   GLP  AT +GGP +II    +G  IDP+  DQ +  +AD   K   +   W K    GLK I+
Sbjct:  567 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIIGVLDNGLLIDPH--DQKS--IADALLKLVADKHLWTKCRQNGLKNIH 657          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS_SOLTU (Sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.761e-12
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   83 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            ++YR  A TKG F+ PAF E FGLT++EA   GLP  AT +GGP +I     +G  +DP H  QA   +AD   K   +   W K    GLK I+
Sbjct:  557 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLVDP-HDQQA---IADALLKLVADKQLWAKCRANGLKNIH 647          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS_BETVU (Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            +Y L GQ  +      +A   E+YR  A TKG F+ PAF E FGLT++EA   GLP  AT +GGP +I     +G  +DP+     A  +     K   +   W K    GLK I+
Sbjct:  537 QYDLYGQVAY-PKHHKQADVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIQRVLDNGLLVDPHEQQSIATALL----KLVADKQLWTKCQQNGLKNIH 647          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS2_CRAPL (Sucrose-phosphate synthase 2 OS=Craterostigma plantagineum GN=SPS2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            RY L GQ  +      ++   E+YR  + TKG F+ PAF E FGLT++EA   GLP  AT +GGP +I     +G  +DP+  D  A  +     K     + W +    GLK I+
Sbjct:  560 RYDLYGQVAF-PKHHKQSDVPEIYRLASKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDQDAIANALL----KLVSEKNLWNECRKNGLKNIH 670          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS1_CRAPL (Sucrose-phosphate synthase 1 OS=Craterostigma plantagineum GN=SPS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   83 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            ++YR  A TKG F+ PAF E FGLT++EA   GLP  AT +GGP +I     +G  +DP++     E +AD   K       W K    GLK I+
Sbjct:  558 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGILVDPHN----QESIADALLKLVAEKHLWAKCRANGLKNIH 648          
The following BLAST results are available for this feature:
BLAST of GE213344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SUSY_MEDSA1.992e-4875.42Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUSY_VICFA5.796e-4875.42Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUS3_ORYSJ7.570e-4870.59Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUSY_SACOF1.484e-2753.39Sucrose synthase (Fragment) OS=Saccharum officinar... [more]
SPS_VICFA6.054e-1343.16Sucrose-phosphate synthase OS=Vicia faba GN=SPS PE... [more]
SPS_SPIOL6.054e-1344.21Sucrose-phosphate synthase OS=Spinacia oleracea GN... [more]
SPS_SOLTU1.761e-1243.16Sucrose-phosphate synthase OS=Solanum tuberosum GN... [more]
SPS_BETVU2.300e-1237.07Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS... [more]
SPS2_CRAPL3.004e-1236.21Sucrose-phosphate synthase 2 OS=Craterostigma plan... [more]
SPS1_CRAPL3.924e-1241.05Sucrose-phosphate synthase 1 OS=Craterostigma plan... [more]

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Properties
Property NameValue
Genbank description206 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.