GE213344

Overview
NameGE213344
Unique NameGE213344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS1_CITUN (Sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   83 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            E+YR  A TKG F+ PAF E FGLT++EA   GLP  AT +GGP +I     +G  +DP+  DQ  + +AD   K       W +    GLK I+
Sbjct:  559 EIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPH--DQ--QSIADALLKLVAGKQLWARCRQNGLKNIH 649          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SPS_MAIZE (Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 2
Query:   65 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIY 367
            N+A   E+YR  A  KG F+ PA  E FGLT++EA   GLP  AT +GGP +I     +G  +DP+  DQ A  +AD   K   + + W++    GL+ I+
Sbjct:  566 NQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH--DQNA--IADALLKLVADKNLWQECRRNGLRNIH 662          
The following BLAST results are available for this feature:
BLAST of GE213344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SPS1_CITUN3.924e-1242.11Sucrose-phosphate synthase 1 OS=Citrus unshiu GN=S... [more]
SPS_MAIZE1.491e-1139.60Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1... [more]

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Properties
Property NameValue
Genbank description206 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.