GE213317

Overview
NameGE213317
Unique NameGE213317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 3
Query:   54 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 536
            P   +  Y   K   E L   Y +  G+E R+ R  N YGP      GR    + F  +A    +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A+++    D    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  168 PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.307e-14
Identity = 50/176 (28.41%), Postives = 85/176 (48.30%), Query Frame = 3
Query:   39 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETID-PNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 560
            W   +P+   S Y   K  ++ L + YH+  G++V + R  N YGPR   +  +++  FV + L    + VYGDG+  R +  VSD   GL   +     G  +++G   E T LEL +++ E    P ++I F  + +    +   D S+    LG+ P+V    G+ + V  +R
Sbjct:  140 WAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAGELGYRPRVDFTDGIAETVAWYR 313          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 46/164 (28.05%), Postives = 85/164 (51.83%), Query Frame = 3
Query:   69 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 557
            S Y   KR+ E +   YH   G+++   R F  YG     D       F    L  + + VY  G   R F ++SD+V+G++R ++ +     FNLGN     ++   +++++ ++  AK +F P  + D  +   D+S++++LLG++PKV++ +GL +    F
Sbjct:  155 SLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPD--MAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWF 316          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 54/181 (29.83%), Postives = 83/181 (45.86%), Query Frame = 3
Query:   54 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDP-------------HKRK--PDISRAKELLGWEPKVSLRKGLPKMV 548
            P    S Y   K  ++ L   +H   G+ V      N YGP    +  +++   +A+AL  EPL VYGDGKQ R + FVSD  E +  ++    VG  +N+G   E   +E+ Q +   +D     + RP  +  P             H R+   D S+ K+ LGWEP  +  +G+ + V
Sbjct:  151 PYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLD-----QHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIAQTV 324          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   54 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDP-------------HKRK--PDISRAKELLGWEPKVSLRKGL 536
            P    S Y   K  ++ L   +H   G+ V      N YGP    +  +++   +A+AL  EPL VYGDGKQ R + FVSD  E +  ++    VG  +N+G   E   +E+ Q +   +D     + RP  +  P             H R+   D S+ K+ LGWEP  +  +G+
Sbjct:  151 PYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLD-----QHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGI 320          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 3
Query:   51 NPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 548
            +PI   S Y   K   E     Y+R  G+E  I R  N YG R     +  V+S F+ + L+ +   ++GDG QTR F +V D+ +  LM L     +   N+G   E ++ EL  +++  I    +  +    E + ++   DI +A E LGW+P++ L++G+ ++V
Sbjct:  132 HPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNEI--VNIGTGKETSVNELFDIIKHEIGFRGEAIYDKPREGEVYRIYLDIKKA-ESLGWKPEIDLKEGIKRVV 296          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 3
Query:   75 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR-LMEGEHVGPFNLGNPGEFTMLELA----QVVQETIDPNAKIEFRPNTEDDPHK--RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 563
            Y   K  AE     Y       V I R  N YGP    +  RV+  F++         ++G G Q R+F + +D+VE  +  L +GE    +N+G   E ++++LA    Q+++ET   +    +     D PH   R P  S     LGW+PKV   +G+ K V+ +R+
Sbjct:  166 YASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE--RVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRK 333          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 3
Query:   75 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLGNPGEFTMLELAQVVQETI--DPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 563
            Y   K  AE L M Y R  G+ V   R  N YGP    +  +++  F+  A+  +PL ++GDG   RS+ +  D+ E   + L +GE    +N+G   E  ++++A+ + +    DP + I+F  N   +  +   D  + K+ LGW+ + +   GL K +  + Q
Sbjct:  161 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKK-LGWQERTNWEDGLKKTMDWYTQ 323          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 3
Query:   75 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELA----QVVQETIDPNAKIEFRPNTEDDPHK--RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 563
            Y   K  AE     Y       V I R  N YGP    +  +V+  F++         ++G G QTR+F + +D+VE  + +++    G  +N+G   E ++L+LA    Q+++ET   +    +    +D P    R P  S     LGW PKV  ++G+ K ++ +R+
Sbjct:  166 YASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRE 333          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 46/162 (28.40%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   75 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLGNPGEFTMLELAQVVQET--IDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 551
            Y   K  AE L M Y R  G+ V   R  N YGP    +  +++  F+  A+  +PL ++GDG   RS+ +  D+ E   + L +GE    +N+G   E  ++++A  + +   IDP++ I++  N   +  +   D  + K+ LGW  + +  +GL K ++
Sbjct:  159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKK-LGWCERTNWEEGLRKTME 317          
The following BLAST results are available for this feature:
BLAST of GE213317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GME1_ORYSI5.087e-1532.32GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
ACBB_ACTS54.307e-1428.41dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
Y1055_METJA5.625e-1428.05Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
RFBB_XANCP7.346e-1429.83dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
RFBB_XANCB1.636e-1329.94dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
GALE_METJA1.809e-1229.76Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
TGDS_MOUSE5.264e-1229.41dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
RHM2_ARATH2.613e-1128.31Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
TGDS_BOVIN3.412e-1127.65dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
RHM3_ARATH3.412e-1128.40Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]

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Properties
Property NameValue
Genbank description174 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.