GE213317

Overview
NameGE213317
Unique NameGE213317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 48/166 (28.92%), Postives = 82/166 (49.40%), Query Frame = 3
Query:   75 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLGNPGEFTMLELAQVVQE--TIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 563
            Y   K  AE L M Y R  G+ V   R  N YGP    +  +++  F+  A+R + L ++GDG   RS+ +  D+ E   + L +GE    +N+G   E  + ++A+ + +   +DP A I+F  N   +  +   D  + K+ LGW  + +  +GL K +  + Q
Sbjct:  159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKK-LGWSERTTWEEGLKKTMDWYTQ 321          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 46/170 (27.06%), Postives = 79/170 (46.47%), Query Frame = 3
Query:   75 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELA----QVVQETIDPNAKIEFRPNTEDDP--HKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 563
            Y   K  AE     Y       V I R  N YGP    +  +V+  F++         ++G G QTR+F + +D+VE  + +++    G  +N+G   E ++++LA    Q+++ET   +    +     D P    R P  S     LGW PKV  ++G+ K ++ +R+
Sbjct:  166 YASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRE 333          
The following BLAST results are available for this feature:
BLAST of GE213317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RHM1_ARATH4.457e-1128.92Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
TGDS_HUMAN9.928e-1127.06dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank description174 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.