GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_ASHGO (Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.547e-29
Identity = 58/105 (55.24%), Postives = 85/105 (80.95%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            + ESGEHIVAG GELHLEICL+DL++D   G  +  S PVV++RETV  +S +  +SKSPNKHNR+Y++A+P++E ++ AI+ G+I PRDD KAR++++++E+GW
Sbjct:  522 MSESGEHIVAGTGELHLEICLQDLENDH-AGIPLKISPPVVAYRETVEGESSQVALSKSPNKHNRIYLKAQPIDEEVSLAIEGGKINPRDDFKARARVMADEYGW 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.051e-29
Identity = 58/105 (55.24%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            + ESGEHIVAG GELHLEICL+DL++D   G  +  S PVV++RETV  +S +  +SKSPNKHNR+Y++A P++E ++ AI+ G+I PRDD KAR+++++++FGW
Sbjct:  522 MSESGEHIVAGTGELHLEICLQDLENDH-AGIPLKISPPVVAYRETVEGESSQVALSKSPNKHNRIYLKAEPIDEEVSLAIEAGKINPRDDFKARARVMADDFGW 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 6.051e-29
Identity = 63/105 (60.00%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            IEESGEHI+AGAGELHLEICLKDL++D      + KSDPVVS+RETV E+S +  +SKSPNKHNRL M+A P+ +GL E ID+G +  +D+ KAR++ LSE++ +
Sbjct:  524 IEESGEHIIAGAGELHLEICLKDLEEDH-ACIPLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDY 627          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_CANGA (Elongation factor 2 OS=Candida glabrata GN=EFT1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.903e-29
Identity = 57/105 (54.29%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            + ESGEHIVAG GELHLEICL+DL+++   G  +  S PVV++RETV  +S +  +SKSPNKHNR+Y++A P++E ++ AI+ G+I PRDD KAR++++++E+GW
Sbjct:  522 MSESGEHIVAGTGELHLEICLQDLENEH-AGIPLKISPPVVAYRETVEAESSQVALSKSPNKHNRIYLKAEPMDEEVSLAIEQGKINPRDDFKARARVMADEYGW 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Pichia guilliermondii GN=EFT2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.299e-28
Identity = 59/105 (56.19%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            + ESGEHIVAG GELHLEICL DLQ+D   G  +  SDPVV++RET+  +S    +SKSPNKHNR+Y++A+P++E ++  I++G I PRDD KAR++IL+++ GW
Sbjct:  522 MSESGEHIVAGTGELHLEICLSDLQNDH-AGIPLRISDPVVAYRETIQAESSMVALSKSPNKHNRIYVKAQPIDEEVSLDIENGIINPRDDFKARARILADKHGW 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 123.25 bits (308), Expect = 3.922e-28
Identity = 61/102 (59.80%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEF 335
            EESGEHI+AGAGELHLEICLKDL++D      + KSDPVVS+RETV  +S +  +SKSPNKHNRL+  A+P+ +GLA+ I+ G +  RD+ KAR+KIL+E++
Sbjct:  533 EESGEHIIAGAGELHLEICLKDLEEDH-ACIPLKKSDPVVSYRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKY 633          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.141e-27
Identity = 59/105 (56.19%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            + ESGEHIVAG GELHLEICL+DL++D   G  +  S PVVS+RETV  +S    +SKSPNKHNR+Y++A+P++E ++  I++G I PRDD KAR++IL+++ GW
Sbjct:  522 MSESGEHIVAGTGELHLEICLQDLENDH-AGVPLRISPPVVSYRETVEGESSMVALSKSPNKHNRIYVKAQPIDEEVSLDIENGVINPRDDFKARARILADKHGW 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_BLAHO (Elongation factor 2 OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.542e-27
Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   24 TIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFG 338
            T  E+GEHI+AGAGELHLEICLKDLQDDFM G  I  S PVV FRE+V + +    ++KSPNKHNRLY+   P+ +GLA+ I+D ++ P  + K R++ +S  +G
Sbjct:  544 TNTEAGEHIIAGAGELHLEICLKDLQDDFMKGTPIKISPPVVEFRESVNQATTEPGLAKSPNKHNRLYVNVEPMPDGLAQEIEDQKVTPEQEFKERARYMSTTYG 648          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_DICDI (Elongation factor 2 OS=Dictyostelium discoideum GN=efbA PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.336e-27
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGR-IGPRDDPKARSKILSEEFGW 341
            EESGEHIVAGAGELHLEICLKDL +D   G EI  +DPVVSFRE+V E+S    +SKSPNKHNRL+M+A P+   L + I+ G  I  +DDPKAR+  L++   W
Sbjct:  521 EESGEHIVAGAGELHLEICLKDLAEDH-AGIEIKTTDPVVSFRESVSEESSIMCLSKSPNKHNRLFMKASPISMELQDLIEAGSDISSKDDPKARANYLADNHEW 624          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_DEBHA (Elongation factor 2 OS=Debaryomyces hansenii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.397e-27
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 3
Query:   24 TIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            ++ ESGEHIVA  GELHLEICL DLQ+D   G  +  S P+VS+RETV  +S    +SKSPNKHNR+Y++A+P++E ++  I+ G I PRDD KAR++IL++  GW
Sbjct:  521 SMSESGEHIVAATGELHLEICLSDLQNDH-AGIPLKISPPIVSYRETVNAESSMVALSKSPNKHNRIYVKAQPIDEEVSLDIEKGVINPRDDFKARARILADNHGW 625          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_ASHGO3.547e-2955.24Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=... [more]
EF2_SACKL6.051e-2955.24Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]
EF2_DROME6.051e-2960.00Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_CANGA7.903e-2954.29Elongation factor 2 OS=Candida glabrata GN=EFT1 PE... [more]
EF2_PICGU2.299e-2856.19Elongation factor 2 OS=Pichia guilliermondii GN=EF... [more]
EF2_CAEEL3.922e-2859.80Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_CANAL1.141e-2756.19Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
EF2_BLAHO2.542e-2754.29Elongation factor 2 OS=Blastocystis hominis PE=2 S... [more]
EF2_DICDI4.336e-2760.00Elongation factor 2 OS=Dictyostelium discoideum GN... [more]
EF2_DEBHA7.397e-2754.72Elongation factor 2 OS=Debaryomyces hansenii GN=EF... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.