GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.134e-20
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GE++++G G LH+EI L  L++++  G ++I S P++ +RE++ +KS R    KSPNKHN+LY+   PL+E     I DG I    DPK R+K+L EE GW
Sbjct:  431 EETGEYLLSGMGPLHIEIALTFLKENY--GLDVIASQPIIVYRESIRDKS-RVFEGKSPNKHNKLYISVEPLDEKTISLIHDGIITEDMDPKQRAKVLREEAGW 531          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.414e-19
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GE++++G G LHLEI L  L++ F  G E+  S P+V +RETV ++S R    KSPNKHN+LY+   PL E     I +G +    DPK R++IL+++ GW
Sbjct:  431 EETGEYLLSGMGPLHLEIALTMLREKF--GVEVKASPPIVVYRETVRQQS-RVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAGW 531          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 50/100 (50.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE 329
            EE+GEH++AG GELHLEI    +Q D   G EI  S P+V +RE+V  KS   V  KSPN HNR Y+E  PLE G+ E + DG+I  + +   R KIL E
Sbjct:  427 EETGEHLMAGMGELHLEIVATRIQRD--KGVEIKTSPPIVVYRESVTGKS-GPVEGKSPNHHNRFYIEIEPLEPGVIEVLKDGKIDMKMEEVERRKILIE 523          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +E+GE++++G G LH+EI L  L++ +  G E+  S PV+++RETV  K    V  KSPNKHN+LY+   PLE+ + E I  G I    DP+ R+K+L ++  W
Sbjct:  434 QETGEYLLSGMGMLHIEIALTQLKEVY--GLEVKVSPPVITYRETV-RKPGEKVEGKSPNKHNKLYITVEPLEKEVIEMIQKGEITDDQDPRERAKVLRDKVNW 534          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.939e-17
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GE++++G G LH+EI L  L+D +  G E++ S PV+ +RETV E S +    KSPNKHN+ Y+   PL E     + +G I    D + R+KIL E+ GW
Sbjct:  429 EETGEYLLSGVGTLHIEIALTLLKDLY--GLEVVASPPVIVYRETVRESS-QVFEGKSPNKHNKFYISVAPLNEETLRLMSEGIIVEDMDARERAKILREQAGW 529          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.063e-17
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GE++++G G LH+EI L  L+D +  G E++ S PV+ +RET+ ++S +    KSPNKHN+ Y+   PL E     + +G I    D + R+KIL E+ GW
Sbjct:  431 EETGEYLLSGVGTLHIEIALTLLKDLY--GLEVVTSPPVIVYRETIRDRS-QVFEGKSPNKHNKFYISVTPLNEETLRLLSEGIIMEDMDARERAKILREQAGW 531          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.498e-16
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GE++++G G LHLE+ L+ L++++  G +++ S P+V +RE++  KS +    KSPNKHN+LY+   PL E   E I +G I    D K  ++IL E+  W
Sbjct:  433 EETGEYLLSGMGFLHLEVSLQLLKENY--GVDVVTSPPIVVYRESIRTKS-QVFEGKSPNKHNKLYISVEPLNEQTIELIANGTIKEDMDSKEMARILKEQADW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRWO (Elongation factor 2 OS=Pyrococcus woesei GN=fusA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  LQ D+  G E+  S+P+V +RE++ + S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   DPKA +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLYKLQKDW--GIEVDVSEPIVVYRESITKPS-PIVEGKSPNKHNRFYVVVEPMPDEIYQAIKEGIIPEGRVKDPKAVAKKLAE 524          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRFU (Elongation factor 2 OS=Pyrococcus furiosus GN=fusA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  LQ D+  G E+  S+P+V +RE++ + S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   DPKA +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLYKLQKDW--GIEVDVSEPIVVYRESITKPS-PIVEGKSPNKHNRFYVVVEPMPDEIYQAIKEGIIPEGRVKDPKAVAKKLAE 524          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.309e-15
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE 329
            EE+GEH+++G GELHLE+ ++ ++ D+    ++I S P+V FRETV   S   V  KSPNKHNR Y+   PL E + +   +G +  + D K R ++L E
Sbjct:  425 EETGEHLISGMGELHLEVKVEKIRRDYK--LDVITSPPIVVFRETVTGTS-PVVEGKSPNKHNRFYIVVEPLPEKVIQMFKEGVVDMKMDKKERRRLLQE 521          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_STAMF5.134e-2045.19Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_AERPE7.414e-1945.19Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_METTP1.398e-1750.00Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_IGNH41.398e-1742.31Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_DESMO6.939e-1743.27Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_DESK19.063e-1741.35Elongation factor 2 OS=Desulfurococcus kamchatkens... [more]
EF2_SULTO4.498e-1640.38Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_PYRWO1.002e-1545.10Elongation factor 2 OS=Pyrococcus woesei GN=fusA P... [more]
EF2_PYRFU1.002e-1545.10Elongation factor 2 OS=Pyrococcus furiosus GN=fusA... [more]
EF2_ARCFU1.309e-1542.00Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.