GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.808e-15
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEF 335
            EE+GEH++AG GELHLE+ +  + D    G E+  S+P+V +RET+   +   V  KSPNKHNR Y++  PL + L  AI +G I    + + + K L++ F
Sbjct:  428 EETGEHLIAGMGELHLEVIIYRINDK---GLEVETSEPIVVYRETIAG-TATNVEGKSPNKHNRFYIDIEPLSDDLMNAISEGEI---PEGRVKGKELAKTF 522          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.808e-15
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEF 335
            EE+GEH+V+G GELHLE+    ++D    G EI  S+P+V +RETV + S + V  KSPNKHNR Y+   PLE+ L +A+ +G++    + K + K  + +F
Sbjct:  428 EETGEHLVSGMGELHLEVISYRIKDK---GVEIQTSEPIVVYRETVSQLSPQ-VEGKSPNKHNRFYITVEPLEDELFKALQEGKL---KEGKVKGKESANDF 522          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.495e-15
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  L+ ++    ++  S P+V +RE+V ++S   V  KSPNKHNR Y+   PL + + EAI +G I  G   DPKA +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLYRLKTEWKLDVDV--SPPIVVYRESVTKQS-PIVEGKSPNKHNRFYITVEPLPDAIYEAIREGEIPEGRPKDPKAVAKKLAE 524          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.495e-15
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILS--EEFG 338
            +E+GEH+++G GELHLE+ +  +++D+    +++ S+P+V +RETV +K       KSPNKHNR Y +  PL E +  AI DG+I      K +  +++  EE G
Sbjct:  426 QETGEHLISGMGELHLEVTIYRIKNDYK--VDVVTSEPLVVYRETV-DKKGGPFEGKSPNKHNRFYFQVEPLPENVVSAILDGKIPEGSKFKDKKAVMANLEEAG 527          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI 284
            +E+GEH+++G GELHL++ L  +++D+    E+  S+P+V +RETV EK       KSPNKHNR Y E  PL+  + +AI+DG I
Sbjct:  426 QETGEHLISGMGELHLDVTLYRIKNDYK--IEVETSEPIVVYRETV-EKKGGPFEGKSPNKHNRFYFEVEPLKPEVIQAIEDGDI 507          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GW
Sbjct:  433 QETGQILLSGVGTLHLEIATWLLKE--RSKTEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTIELIATKEITEDQDPRERAKILREKAGW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GW
Sbjct:  433 QETGQILLSGVGTLHLEIATWLLKERTK--VEFSVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTVELIATREITEEQDPRERAKILREKAGW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHN+LY    PL+E   E I    I    DP+ R+KIL E+ GW
Sbjct:  433 QETGQILLSGVGTLHLEIATWLLKE--RAKTEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNKLYFYVEPLDETTVELIATKEITEEQDPRERAKILREKAGW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GW
Sbjct:  433 QETGQILLSGVGTLHLEIATWLLKERTK--TEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTIELIATREITEDQDPRERAKILREKAGW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  L+ ++    E+  S P+V +RE+V ++S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   DPKA +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLHRLKTEWKLDVEV--SPPIVVYRESVTKQS-PIVEGKSPNKHNRFYITVEPMPDEIYQAIREGEIPEGRPKDPKAVAKKLAE 524          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_METST3.808e-1541.18Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_METS33.808e-1543.14Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
EF2_THEON6.495e-1544.12Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_PICTO6.495e-1539.05Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_THEVO8.483e-1545.88Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_PYRIL8.483e-1543.27Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_PYRCJ8.483e-1543.27Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_PYRAR8.483e-1542.31Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_THENV1.447e-1443.27Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRKO1.447e-1443.14Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.