GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEF 335
            EE+GEH+++G GELHLEI    + +    G EI  S+P+V +RETV   +   V  KSPNKHNR Y+E  P+E  + +AI +G+I    + + + K +++ F
Sbjct:  428 EETGEHLISGMGELHLEIIAYRINEK---GVEIETSEPIVVYRETVAG-TAGPVEGKSPNKHNRFYIEIEPVEASVMQAIQEGKI---KEGRVKGKEMAKNF 522          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GEH+++G GELHLEI    ++ D   G EI+ S+P+V +RET   K+   +  KSPN+HNR Y+E  PL++ + + I +G +        R  IL    GW
Sbjct:  428 EETGEHLISGMGELHLEIITGRIKRD--KGVEIVTSEPIVVYRETATRKA-GPIEGKSPNRHNRFYVELEPLDQVIVDLIRNGEVSMNQTWIERRDILVAN-GW 527          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_SULAC (Elongation factor 2 OS=Sulfolobus acidocaldarius GN=fusA PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.890e-14
Identity = 39/104 (37.50%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+LY+   PL     + I +G I    D K  +KIL ++  W
Sbjct:  433 EETGEYLLSGMGFLHLEVSLQLLKENY--GLDVVTTPPIVVYRESIRNKS-QVFEGKSPNKHNKLYISVEPLNNQTIDLIANGTIKEDMDNKEMAKILRDQAEW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDP-KARSKILSE 329
            EE+GEH+++G GELH+EI  K L+ +   G  +    P+V +RETV  +S   V SKSPNKHN+LY    PLEE + +A  +GRI   D   K   KI+ E
Sbjct:  428 EETGEHLLSGMGELHIEIITK-LKIERDAGIPVEVGQPIVVYRETVTGQS-PVVESKSPNKHNKLYFVVEPLEESVLQAYKEGRIPDVDTKRKLDDKIVQE 526          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    +P+ R+KIL E+ GW
Sbjct:  433 QETGQILLSGVGTLHLEIATWLLKERTK--TEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTIELIASREITEDQEPRERAKILREKAGW 533          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ W
Sbjct:  620 VEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW 723          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ W
Sbjct:  621 VEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW 724          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ W
Sbjct:  621 VEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW 724          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ W
Sbjct:  621 VEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW 724          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.181e-14
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +EESGEH++ G GEL+L+  + DL   +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ W
Sbjct:  621 VEESGEHVILGTGELYLDCVMHDLPKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW 724          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_METTH1.447e-1441.18Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_METPE1.447e-1440.38Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_SULAC1.890e-1437.50Elongation factor 2 OS=Sulfolobus acidocaldarius G... [more]
EF2_METJA2.468e-1445.54Elongation factor 2 OS=Methanocaldococcus jannasch... [more]
EF2_PYRAE3.223e-1442.31Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
U5S1_MOUSE4.210e-1438.10116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN4.210e-1438.10116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK4.210e-1438.10116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN4.210e-1438.10116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB7.181e-1438.10116 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.