GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.181e-14
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  L++ +  G ++  S+P+V +RE++ ++S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   D K  +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLVHLKEQW--GVDVDVSEPIVVYRESITKQS-PIVEGKSPNKHNRFYIVVEPMPDEIYQAIREGEIPEGRPKDTKVVAKKLAE 524          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.181e-14
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 305
            EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET++  S   +  KSPNKHN+LYM A P+EE +  A  +G++   D  K
Sbjct:  429 EETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETIMGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKLHDEDYKK 518          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.181e-14
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 305
            EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET++  S   +  KSPNKHN+LYM A P+EE +  A  +G++   D  K
Sbjct:  429 EETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETIMGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKLHDEDYKK 518          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.379e-14
Identity = 43/102 (42.16%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  L+ D+  G +I  S+P+V +RE++  KS   V  KSPN+HNR Y+   P+ + +  AI +G I  G   +PK  +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLYKLKKDW--GIDIEVSEPIVVYRESIT-KSSPMVEGKSPNRHNRFYIVVEPMPDEIYNAIKEGIIPEGRVKNPKEVAKKLAE 524          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.379e-14
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKIL 323
            EE+GEH+++G GELHLEI    ++ D   G EI+ S+P+V +RETV  K    V  KSPN+HNR Y    PL E +   I  G I        R  +L
Sbjct:  428 EETGEHLISGMGELHLEIVTGRIKRD--KGVEIVTSEPIVVYRETVTGK-VEDVEGKSPNRHNRFYFTLEPLPEEIVNLIKAGEITMNQQAIERRDVL 522          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METAC (Elongation factor 2 OS=Methanosarcina acetivorans GN=fusA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.379e-14
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI 284
            EE+GEH++AG GELHLE+    ++ D     EI  S P+V +RET+ +K+   +  KSPN+HNR Y+ A PL+  +  AI +G +
Sbjct:  427 EETGEHLMAGMGELHLEVIAHRIERD--KNVEITTSKPIVVYRETIKKKT-EPIEGKSPNRHNRFYIYAEPLDTEIVSAIKEGEV 508          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 305
            EE+GEH+++G GELH+E+ + + +    GG E+   +P++ +RET+   S   +  KSPNKHN+LYM A P+EE +  A  +G+I   D  K
Sbjct:  429 EETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIIVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKIHDEDFKK 518          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METTE (Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI 284
            EE+GEH++AG GELHLE+    +Q D     EI  S P+V +RET+ +K    V  KSPN+HNR Y+   PL+  + E I  G I
Sbjct:  427 EETGEHLMAGMGELHLEVIAHRIQRD--KNVEITTSKPIVVYRETI-KKKIEPVEGKSPNRHNRFYIYVEPLDTAIVEMIKSGDI 508          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METMJ (Elongation factor 2 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.600e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI 284
            EE+GEH+++G GELHLEI    ++ D   G +I+ S P+V +RET+   S   V  KSPN+HNR Y+E  P++  + + I DG I
Sbjct:  428 EETGEHLISGMGELHLEIITGRIKRD--KGVDILTSPPIVVYRETITG-SVGPVEGKSPNRHNRFYIELEPMDPAIVKMILDGEI 509          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 43/102 (42.16%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  L+ ++    ++  S P+V +RE+V +KS   V  KSPNKHNR Y+   P+ + + EAI +G I  G   +PK  +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLYRLKTEWKLDVDV--SPPIVVYRESVTKKS-PIVEGKSPNKHNRFYITVEPMPDEIYEAIREGIIPEGRPKNPKEVAKKLAE 524          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_THESM7.181e-1440.20Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_METMP7.181e-1441.30Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METM57.181e-1441.30Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_PYRHO9.379e-1442.16Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_METB69.379e-1442.86Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_METAC9.379e-1443.53Elongation factor 2 OS=Methanosarcina acetivorans ... [more]
EF2_METVS1.225e-1341.30Elongation factor 2 OS=Methanococcus vannielii (st... [more]
EF2_METTE1.225e-1345.88Elongation factor 2 OS=Methanosarcina thermophila ... [more]
EF2_METMJ1.600e-1344.71Elongation factor 2 OS=Methanoculleus marisnigri (... [more]
EF2_THEGJ2.089e-1342.16Elongation factor 2 OS=Thermococcus gammatolerans ... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.