GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI 284
            EE+GEH++AG GELHLE+    ++ D     EI  S P+V +RET+ +K+   +  KSPN+HNR Y+   PL+  +  AI +G I
Sbjct:  427 EETGEHLMAGMGELHLEVIAHRIERD--KNVEITTSKPIVVYRETIKKKT-EPIEGKSPNRHNRFYISVEPLDLEIVSAIKEGEI 508          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 305
            EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET+   S   +  KSPNKHN+LYM A P++E +  A  +G+I   D  K
Sbjct:  429 EETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMDESVYAAYVEGKIHDEDYKK 518          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 305
            EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET+   S   +  KSPNKHN+LYM A P++E +  A  +G+I   D  K
Sbjct:  429 EETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMDESVYAAYVEGKIHDEDYKK 518          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +EESGEH + G GE++++  L DL+  +    EI  SDPV  F ET ++ S     S +PNK NR+ M   PLE+G++  I++G++      K  S+   + + W
Sbjct:  634 VEESGEHTIFGTGEMYMDCLLYDLRTLY-SEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDW 737          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSE 329
            EE+G+H+++G GELHLE+ L  L+ D+  G +I  S+P+V +RE++ + S   V  KSPN+HNR Y+   P+ + +  AI +G I  G   +PK  +K L+E
Sbjct:  426 EETGQHLLSGMGELHLEVKLYKLKKDW--GIDIDVSEPIVVYRESITKPS-PMVEGKSPNRHNRFYIVVEPMPDEIYNAIKEGIIPEGRIKNPKEVAKKLAE 524          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.564e-13
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILS 326
            EE+GEH++AG GELHLE+    ++ D   G EI  + P+V +RET+   +   V  KSPN+HNR Y+   PLE  + E I +G I  R  + + R K+++
Sbjct:  427 EETGEHLMAGMGELHLEVIAHRIERD--KGVEISTTPPIVVYRETITG-TAGPVEGKSPNRHNRFYVVVEPLEPEVRELIREGEISMRMPELERREKLIA 523          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METBF (Elongation factor 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.655e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI 284
            EE+GEH++AG GELHLE+    ++ D     EI  S P+V +RET+ +K    V  KSPN+HNR Y+   PL+  +  AI  G I
Sbjct:  427 EETGEHLMAGMGELHLEVIAHRIERD--KNVEITTSKPIVVYRETI-KKKIEPVEGKSPNRHNRFYIYVEPLDLEIVSAIKSGEI 508          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.939e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   33 ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDD 275
            + G++ +A AG LHLEICLKDLQD +     II  DP+V++ E +      + M+KS NKHNR+YM   PL++ + + + D
Sbjct:  535 DKGQNTIACAGSLHLEICLKDLQDQY-AKVPIIADDPLVTYFEGISCAVSDSKMTKSANKHNRIYMTVEPLDQNIVDNLKD 614          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILS 326
            EE+GEH++AG GELHLE+    ++ D   G EI  + P+V +RET+   +   V  KSPN+HNR Y+   PLE  + E I +  I  R  + + R K+++
Sbjct:  427 EETGEHLMAGMGELHLEVIAHRIERD--KGVEITTTPPLVVYRETI-TGTAGPVEGKSPNRHNRFYVIVEPLEPEVRELIRNDEISMRMPEVERREKLMA 523          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSK 317
            EE+GEH+++G GELH+E+ + + +     G E+   +P+V +RE V   S   V  KSPNKHNRLY  A PL+E +  A  +G I   D  K   K
Sbjct:  429 EETGEHLISGMGELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPK 522          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_METMA2.089e-1343.53Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_METM72.089e-1341.30Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM62.089e-1341.30Elongation factor 2 OS=Methanococcus maripaludis (... [more]
SN114_SCHPO2.729e-1336.19114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_PYRAB2.729e-1341.18Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_METMT3.564e-1341.00Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_METBF4.655e-1344.71Elongation factor 2 OS=Methanosarcina barkeri (str... [more]
EF2_ENCCU7.939e-1343.21Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
EF2_METBU3.940e-1240.00Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_META31.497e-1141.67Elongation factor 2 OS=Methanococcus aeolicus (str... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.