GE213307

Overview
NameGE213307
Unique NameGE213307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.536e-16
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NCG+C PKDKAIK+F+VRNIV  AAVRD+ +A  YD Y LPKLY K+ Y
Sbjct:   18 VRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.006e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VK IRCSNC +C PKDKAIKRF +RN+VE AA+RD+ +A V+  YT+PK+Y K+QY
Sbjct:   18 VKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.006e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY ++ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26B_SCHPO (40S ribosomal protein S26-B OS=Schizosaccharomyces pombe GN=rps26b PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.422e-16
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VKF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  YT+PKLY K+QY
Sbjct:   18 VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_SCHCO (40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V F+RCSNC +C  KDKAIKRF VRN+VE AA+RD+ +A VY  Y +PKLY K+ Y
Sbjct:   18 VTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYPEYAIPKLYIKIAY 73          
The following BLAST results are available for this feature:
BLAST of GE213307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS26_MOUSE6.896e-1766.0740S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA6.896e-1766.0740S ribosomal protein S26 OS=Macaca fascicularis G... [more]
RS26_HUMAN6.896e-1766.0740S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]
RS26_BOVIN6.896e-1766.0740S ribosomal protein S26 OS=Bos taurus GN=RPS26 P... [more]
RS26_SHEEP1.176e-1666.0740S ribosomal protein S26 OS=Ovis aries GN=RPS26 P... [more]
RS26_BRUPA1.536e-1666.0740S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
RS26_NEUCR2.006e-1664.2940S ribosomal protein S26E OS=Neurospora crassa GN... [more]
RS26_CRICR2.006e-1664.2940S ribosomal protein S26 OS=Cricetus cricetus GN=... [more]
RS26B_SCHPO3.422e-1664.2940S ribosomal protein S26-B OS=Schizosaccharomyces... [more]
RS26_SCHCO1.699e-1562.5040S ribosomal protein S26 OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank description162 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.