GE213307

Overview
NameGE213307
Unique NameGE213307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.218e-15
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C P DKAIK+F++RNIVE AAVRD+ E  V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.430e-15
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
Query:  133 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            KF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  Y +PK+Y K+QY
Sbjct:   19 KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.136e-14
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ Y
Sbjct:   18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.136e-14
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ Y
Sbjct:   18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.758e-12
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD--GYTLPKLYAKMQY 297
            V +IRC+NC +C PKDKA+KRF +R IVE AAV+D+ +  V++  GY  P+ Y K QY
Sbjct:   18 VPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQY 75          
The following BLAST results are available for this feature:
BLAST of GE213307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS26L_HUMAN2.218e-1562.50Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26A_SCHPO8.430e-1560.0040S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26B_YEAST7.136e-1464.2940S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST7.136e-1464.2940S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_DICDI1.758e-1253.4540S ribosomal protein S26 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank description162 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.