GE213298

Overview
NameGE213298
Unique NameGE213298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  273 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 455
            +FDPFA+    D  A S +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CNG
Sbjct:    8 SFDPFADTG--DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNG 66          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  273 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 455
            +FDPFA+    D    + +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG
Sbjct:    8 SFDPFADTG--DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNG 66          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 3
Query:  279 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGT 68          
The following BLAST results are available for this feature:
BLAST of GE213298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
EIF1_MOUSE4.201e-1556.25Eukaryotic translation initiation factor 1 OS=Mus ... [more]
EIF1_HUMAN4.201e-1556.25Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN4.201e-1556.25Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1B_PIG5.486e-1556.25Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE5.486e-1556.25Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA5.486e-1556.25Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN5.486e-1556.25Eukaryotic translation initiation factor 1b OS=Hom... [more]
SUI1_ASHGO6.066e-1457.38Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST1.035e-1355.74Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_SCHPO5.135e-1358.33Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank description152 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.