GE213298

Overview
NameGE213298
Unique NameGE213298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:  270 SAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            + FDPFA+A            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGT
Sbjct:    7 NTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGT 69
[Close]
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  279 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGT
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGT 69
The following BLAST results are available for this feature:
BLAST of GE213298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SUI1_ANOGA1.951e-1255.56Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME2.548e-1256.67Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank description152 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.