GE213293

Overview
NameGE213293
Unique NameGE213293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESEDE--KKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + V  L EF+GKKL S  K  L L + EDE  K+ ++  +++++ L + I+  LG              SP CLV GE+  + N+ER++KA   +         SK  +EINP++ I++ L+   D  K      D          L  G  L+DP  F  R++ ML
Sbjct:  471 WLVSSLTEFDGKKLQSVAKGDLDLGKLEDEAEKEQQKKTEDEYKPLVERIQAALGDSVKEVRVTHRLTDSPACLVAGEHDLSGNLERLLKAAGQKT------PGSKPILEINPDHGIVQRLKDVTDEAK----FADWAHLLFDQALLAEGGQLEDPAAFVRRVNAML 627          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_SHELP (Chaperone protein htpG OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 50/167 (29.94%), Postives = 83/167 (49.70%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + +  L EF+GK+L S T+  L+L E ED  EK+ +E L+ + EGL K +K+VLG              +P C+V G    ++ M ++M+A             SK   E+NPE+P++    KR D +++++              L+   SL DP+ F   +++ML
Sbjct:  478 WLINHLSEFDGKQLHSVTRGDLELGELEDAAEKEAQEKLETESEGLVKRVKEVLGDKVAEVKVTSRLTDTPACVVAGAGEMSSQMIKLMQAAG------QAVTESKPVFELNPEHPLV----KRLDTEQDEEVFGQWAELLLQQAQLSEKGSLADPSAFIKLMNKML 634          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 56/171 (32.75%), Postives = 82/171 (47.95%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLKEK----FEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKA--QALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + V  L E++ KKL +  +  + LD SE+EKK KET +E+    +  L   IK  L               S CCLV  EYG  ANMERI+KA  Q + D        SK+ +E+NP++PIM+ + +    +K D  + D          LT G  + DP  F   +  ++
Sbjct:  478 WVVQALTEYKEKKLKAVDRGDVDLD-SEEEKKEKETKQEEARKEYGDLISFIKSHLEDRVKDARLSKRLTDSACCLVADEYGINANMERILKAMNQPVPD--------SKRVLELNPDHPIMKIMTEIFRENKEDARLTDYADLLYDQALLTEGSPIKDPLRFTRLVSELM 639          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = -1
Query:  230 YAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLKE--KFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRM 721
            + V  L EFEGK L S  K  L L + EDE + KE  KE  +++ L + IK+VLG              SP CLVT  +  + N+ER++K+   +         +K  +EINP +P++E L+        +    D          L  G  L+DP +F  RI+++
Sbjct:  478 WLVANLPEFEGKHLQSVAKGSLDLGKLEDEAEKKEQEKEAGEYKELTEKIKEVLGEQVKDVRITLRLTESPACLVTETHDMSGNLERLLKSAGQK------VTHTKPILEINPYHPMVERLK------SEETHFADWSHILFDQALLAEGGQLEDPASFVKRINQL 631          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + +  L EF+GKKL S T+  L+L E ED  EK+ +E L+ + EGL K +KD LG              +P C+V GE   +  M ++M+A             SK T E+NPE+P++  L    D    ++              L+   SL DP+ F   +++ML
Sbjct:  478 WLINHLTEFDGKKLHSVTRGDLELGELEDASEKEAQEKLETESEGLVKRVKDSLGDKVSAVKVTTRLTDTPACVVAGEGEMSTQMIKLMQAAG------QDVPESKPTFELNPEHPLVARLNDEQD----EQRFAQWSELLLQQALLSEKGSLADPSAFIKLMNQML 634          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 54/169 (31.95%), Postives = 76/169 (44.97%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYM--SSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + +  L E++GK L S  K GL L E ED  EKK  E   E  + L + +K  L               SP CLV GEY +   M+R++KA        AG+     K  +EIN ++PI++    R D   +D    D          LT G  L+DP  F  R++ +L
Sbjct:  479 WVITHLNEYDGKPLKSVAKGGLDLGELEDQAEKKAAEEATESHKDLLEKLKGALEDKVSEVRVSTRLTDSPACLVVGEYDFGMGMQRLLKA--------AGHAMPQGKPALEINIDHPIVQ----RMDTGLDDARFSDWAAVLYDQALLTEGGQLEDPAAFVKRVNALL 635          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 46/169 (27.22%), Postives = 83/169 (49.11%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDE--SEDEKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYM--SSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + V  L E++GK+L S  K  L L+    ED+K+ ++  ++ +E LCK + + LG              SP CLV GEY +   M+R+++A        AG+   + +  +E+NP++ ++E L     A ++ +  +D          L  G  L+DP  +  R++ +L
Sbjct:  476 WLVAHLHEYDGKQLASVAKGELDLEALGEEDDKQARQEKEQAYEDLCKRLGETLGERVSEVRVSHRLTDSPACLVVGEYDFGMGMQRLLQA--------AGHQLPAGQPALEVNPDHSVIERL-----ATESGQRFEDWALTLYEQSLLAEGGQLEDPAAYVRRVNNLL 631          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 52/173 (30.06%), Postives = 86/173 (49.71%), Query Frame = -1
Query:  209 YAVGQLKEFEGKKLVSATKEGLKLDESEDE--KKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI 721
            +  G L EF+GK L S  K  L L   EDE  K+ ++ ++E  + + + ++  LG              SP CLV GE+  +A++ER++KA   +         SK T+EINPE+ +++ L + +D    +    D          L  G  L+DP +F  RI++++ L LS+
Sbjct:  470 WVTGSLFEFDGKALQSVAKGALDLGALEDEADKEAQKQVEEASKPVVEKVQKALGDKVKEVRATARLVESPACLVAGEHDMSAHLERMLKAAGQK------IEGSKPTLEINPEHVLVKRLAEESD----EARAGDLAAVLYDQALLAEGGKLEDPASFVKRINKLM-LELSV 631          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPA (Chaperone protein htpG OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + +  L EF+GKKL S T+  L+L E ED  EK+ +E L+ + EGL K +KD LG              +P C+V GE   +  M ++M+A              K T E+NPE+P++  L    D    ++              L+   SL DP+ F   +++ML
Sbjct:  477 WLINHLTEFDGKKLHSVTRGDLELGELEDDDEKEAQEKLQTESEGLVKRVKDSLGDKVSEVKVTTRLTDTPACVVAGEGEMSTQMIKLMQAAG------QDVPEPKPTFELNPEHPLVARLNDEQD----EQQFAQWSELLLQQALLSEKGSLADPSAFIKLMNQML 633          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = -1
Query:  491 YAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEY 721
            Y V QLKEF+GK L+S TKEGL+L E E+EKK+ E    KFE LC+ +K++L               SPC +VT  Y
Sbjct:  428 YCVQQLKEFDGKSLLSVTKEGLELPEDEEEKKIMEESNVKFENLCRLMKEILDKKVERVTISSRLVSSPCRIVTSTY 504          
The following BLAST results are available for this feature:
BLAST of GE213293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
HTPG_METFK1.699e-1231.14Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_SHELP2.219e-1229.94Chaperone protein htpG OS=Shewanella loihica (stra... [more]
HTPG_PELPD2.898e-1232.75Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_NITMU2.898e-1231.33Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_SHEHH3.785e-1231.14Chaperone protein htpG OS=Shewanella halifaxensis ... [more]
HTPG_ALHEH3.785e-1231.95Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HTPG_HALHL6.456e-1227.22Chaperone protein htpG OS=Halorhodospira halophila... [more]
HTPG_CHRVO6.456e-1230.06Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_SHEPA1.101e-1130.54Chaperone protein htpG OS=Shewanella pealeana (str... [more]
H90B4_HUMAN1.101e-1146.75Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]

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Properties
Property NameValue
Genbank description147 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.