GE213293

Overview
NameGE213293
Unique NameGE213293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF5 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 52/167 (31.14%), Postives = 81/167 (48.50%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLD--ESEDEKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            +    L EFEGK L S  K  L L   E+E+E+K +E  ++  EGL + IK+ LG              SP C+V GE      M++++K QA  + S     S+K  +EINP +P++     R + +K+D    +          L  G  L+DP  F  RI++++
Sbjct:  468 WLTSHLPEFEGKALTSVAKGALDLGAIETEEERKSQEETEKDAEGLVERIKNALGERVETVRVSHRLTSSPACIVLGERDMALYMQQLLK-QAGHEIS-----STKPVLEINPTHPML----ARIEGEKDDTRFAEWSALLLDQAILAEGGQLEDPAGFVARINQLM 624          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF2 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 52/167 (31.14%), Postives = 81/167 (48.50%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLD--ESEDEKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            +    L EFEGK L S  K  L L   E+E+E+K +E  ++  EGL + IK+ LG              SP C+V GE      M++++K QA  + S     S+K  +EINP +P++     R + +K+D    +          L  G  L+DP  F  RI++++
Sbjct:  468 WLTSHLPEFEGKALTSVAKGALDLGAIETEEERKSQEETEKDAEGLVERIKNALGERVETVRVSHRLTSSPACIVLGERDMALYMQQLLK-QAGHEIS-----STKPVLEINPTHPML----ARIEGEKDDTRFAEWSALLLDQAILAEGGQLEDPAGFVARINQLM 624          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_SHESH (Chaperone protein htpG OS=Shewanella sediminis (strain HAW-EB3) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = -1
Query:  350 YAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 721
            + +  L +F+GK+L S T+  L+L + ED  EK+ +E L+ + EGL K IKD LG              +P C+V GE   +  M ++M+A             SK T EINPE+P++  L    D
Sbjct:  477 WLINHLTDFDGKQLHSVTRGDLELGDLEDAGEKEAQEKLETESEGLVKRIKDSLGEKVSAVKVTTRLTDTPACVVAGEGEMSTQMIKLMEAAG------QAVPESKPTFEINPEHPLVARLNDEQD 596          
BLAST of GE213293 vs. ExPASy Swiss-Prot
Match: HTPG_SHEDO (Chaperone protein htpG OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 50/167 (29.94%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  227 YAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKAIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 721
            + +  L EF+GKKL S T+  L+L E ED  +K+ K+ + E+ +GL + +K  LG              +P C+V GE   +  M ++M+A             SK T EINP +P++  L   AD    ++   D          L+   SL DP+ F   +++ML
Sbjct:  476 WLINHLTEFKGKKLHSVTRGDLELGELEDAADKEAKDKITEEAKGLVERMKAALGAKVSEVKVTTRLTDTPACVVAGEGEMSTQMIKLMQAAG------QAVPESKPTFEINPNHPLVARLNDEAD----EQLFADWASLLLQQAQLSEKGSLADPSAFIKLMNQML 632          
The following BLAST results are available for this feature:
BLAST of GE213293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
HTPG_ACIF51.438e-1131.14Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_ACIF21.438e-1131.14Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_SHESH3.204e-1134.13Chaperone protein htpG OS=Shewanella sediminis (st... [more]
HTPG_SHEDO4.185e-1129.94Chaperone protein htpG OS=Shewanella denitrificans... [more]

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Properties
Property NameValue
Genbank description147 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.