GE213277

Overview
NameGE213277
Unique NameGE213277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 58/198 (29.29%), Postives = 93/198 (46.97%), Query Frame = -3
Query:  156 YKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 725
            + I G GTV  GRVE GV+K G    +V  G + +TT V  +EM  + L E++ GDNVG  ++ +   +++RG V +  K        NF +QV ++N           +GY P     T+ +  K     T     +G+ +    K +  GD   +K    +P+ +E         RFA+R+  +TV  GV+  + K
Sbjct:  229 FSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKS--ITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTD----AGEPI----KMVLPGDRIKMKAELIQPIAIERNM------RFAIREGGKTVGAGVVGKILK 409          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EFTU_EUGGR (Elongation factor Tu, chloroplastic OS=Euglena gracilis GN=tufA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 55/190 (28.95%), Postives = 92/190 (48.42%), Query Frame = -3
Query:  162 IGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 719
            I G GTV  GRVE G +K G  V     GL    +T +  +EM  ++L EAL GDNVG  ++ +   D++RG V   +K         F SQV I+    + G  + P  + +     V+ +++  KI+     + +   + +  GD   +K+   +P+ +E         RFA+R+  +TV  GV+ ++
Sbjct:  231 ITGRGTVATGRVERGTIKVGETVEL--VGLKDTRSTTITGLEMFQKSLDEALAGDNVGVLLRGIQKNDVERGMVL--AKPRTINPHTKFDSQVYILTK--EEGGRHTPFFEGYRPQFYVRTTDVTGKIE-SFRSDNDNPAQMVMPGDRIKMKVELIQPIAIEKGM------RFAIREGGRTVGAGVVLSI 407          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 53/191 (27.75%), Postives = 91/191 (47.64%), Query Frame = -3
Query:  162 YKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 725
            + I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A +   F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  228 FSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHK--RFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
The following BLAST results are available for this feature:
BLAST of GE213277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
EFTU_PROWI8.495e-1229.29Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_EUGGR4.216e-1128.95Elongation factor Tu, chloroplastic OS=Euglena gra... [more]
EFTU_AQUAE9.392e-1127.75Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]

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Properties
Property NameValue
Genbank description129 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.