FC871692

Overview
NameFC871692
Unique NameFC871692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.792e-55
Identity = 105/226 (46.46%), Postives = 149/226 (65.93%), Query Frame = 3
Query:    3 ECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKE 674
            E +++M   + KN +D  EYP T +L++ CVN++A L+N  +++SE  +G  TVGSSEA ML G+A K +W++     G      KP++V  +  QVCWEKF  Y+++EL+EV +SE +  ++    ++ VDE TI +  ILG T  G+F+D+  LNDL+ + N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY G+GW++WR+KE
Sbjct:   67 EAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKE 290          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.375e-47
Identity = 103/233 (44.21%), Postives = 141/233 (60.52%), Query Frame = 3
Query:   12 KLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTE-KNKETGW---DTPIHVDAASGGFIAPF--------LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNK 671
            KL+   + KN  D DEYP   EL  RC++++A+L++A     E  +G  T GSSEAIML GLA K++W+++ K  GK   KPNI+  +  QV  EKF RYFEVE + V +S   ++++DP    + VDENTI    ILG+T  G  E+V+ + D+L++ + K   W   D PIH D ASGGFI PF         Y    W F  P V S+N SGHK+GL   G+GWV+WR++
Sbjct:  104 KLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWHA--NPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRDE 334          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: SGPL_YEAST (Sphingosine-1-phosphate lyase OS=Saccharomyces cerevisiae GN=DPL1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 62/217 (28.57%), Postives = 110/217 (50.69%), Query Frame = 3
Query:   39 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEW-DFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKE 674
            N +  D +P   ++++  V+++ R+FNAP   S+T  G  T G +E+++LA L+ K    + R        +P I+        ++K A YF ++L+ V+L    Y +D  K  + +++NTI +     +  +G  +D++ L  +  +      +  P+HVD+  G FI  F+    Y  L   DFR+P V SI+   HKYG    G   +++RN +
Sbjct:  195 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTILLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSD 397          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 60/215 (27.91%), Postives = 109/215 (50.70%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVG-VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNK 671
            +N N  D   +P T ++++RC+ +I  L + P      A G + T G+   I     A + K  ++R+A        NIV   +    +EK ++   + ++   L +     DP++   ++D+NTI + A+ G+T  G+ + ++ +  L  E       D  +HVDAA GGF+ PF+    ++DF +P V+SI +  HK GL     G +++R++
Sbjct:   48 VNTNLGDPKLFPGTADIEHRCIGLIGDLLHLP-----AATGYISTGGTESNIQALRTAIQMKHTDRRRA--------NIVVPESAHYSFEKASQMLGIAIRRAPLDD-LLRADPSEMAALIDKNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHKMGLSTIPSGGLLYRSE 242          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 70/212 (33.02%), Postives = 103/212 (48.58%), Query Frame = 3
Query:   39 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKE 674
            N  D   +P TT++++R V+ +  L + P        G GT  + +AI +A          K K E K    PNIV  A+    ++K      +E++ V   + Y V D  K  EMVD+NTI V+AI G+T  G  +DV+ +  +  E       D   HVDAA GG + PFL     +DF +P V SI++  HK G+     G ++ R  E
Sbjct:   51 NLGDPGLFPGTTKIEDRLVHSLGELMHHPGAGGYATSG-GTESNLQAIRIA---------KKLKPEIK---NPNIVVPASAHFSFDKTCDILGLEMRTVPYGKNYTV-DCDKMAEMVDKNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHKMGMSTIPCGCLLLREPE 242          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 60/215 (27.91%), Postives = 101/215 (46.98%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKE 674
            +  N  D   +P T E++ R V I+  L          + G GT  + +A+  A           R + G+     NIV   +    ++K A    +E+++ +L E   V D      ++D+ T+C+  I G+T  G+ + +  L++L  E         P+HVDAA GGF+ PFL  +  WDFR   V+SI +  HK G+     G +++R+ +
Sbjct:   51 LETNLGDPGLFPGTAEIERRVVGILGSLLGCSDATGYVSTG-GTESNIQAVRAA-----------RNSSGRR--DGNIVVPRSAHFSFDKIADLLNLEVRKAELDESLRV-DVGDVERLIDDRTVCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHKMGMSPIPAGGLIFRSSD 244          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 61/198 (30.81%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   39 NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL 632
            N  D   +P T  L++R +   A L++ P     +A G  T G +E+ +   L F +K +N ++        PNI+  A+    +EK     ++E++ V + E Y +   A A E++D+NT C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V  HK GL
Sbjct:   51 NLGDPGLFPGTATLEDRLIRWFADLYHEP-----SAGGCTTSGGTESNIQV-LRFCKKTKNVKE--------PNIIVPASAHFSFEKACGMMDIEMRVVPVDEQYRMKTDA-AGELIDKNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHKMGL 227          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_ARCFU (L-tyrosine decarboxylase OS=Archaeoglobus fulgidus GN=mfnA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 61/214 (28.50%), Postives = 99/214 (46.26%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNK 671
            I  N  D   +  T EL+ + + +I  + +      ET  G    G +EA  + G+   R  Q K        + PNIV        +EK      V++K   + E Y V D  +  +++DENT+ +  I G+T  G+ + +  L+ L  E+  E      +HVDAA GG + PF+     +DF+   V SI +  HK G+     G +++RN+
Sbjct:   40 IETNLGDPGIFRGTVELEAKLMRLIGDILHC-----ETPAGYICSGGTEA-NIQGIRAARNVQKK--------ENPNIVIPKTAHFSFEKIGDILGVKIKRAGVDEEYKV-DVGQVEDLMDENTVAIVGIAGTTELGQIDPIVELSKLAEERQVE------LHVDAAFGGLVIPFMDNPYPFDFQNRGVSSITIDPHKMGMATIPAGGIIFRNE 232          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_METAC (L-tyrosine decarboxylase OS=Methanosarcina acetivorans GN=mfnA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 63/221 (28.51%), Postives = 104/221 (47.06%), Query Frame = 3
Query:   30 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLED-------SETAVGVGTVGSSEAIMLAGLAFKRK-WQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRN 668
            I  N  D+  +   + L+   V ++  L +AP  D         +A G  T G +E+ + A    K      K++ +G P    NIV   +    ++K A    +E++   L   + V D A    ++D NTI +  I G+T  G+ + +  L+++  E       +  +H+DAA GGF+ PFL     +DF+LP V SI V  HK GL     G +++R+
Sbjct:   48 IEANLGDLGLFAGASRLEQEVVGMLGELLHAPSIDVPFGGSCESSACGYLTTGGTESNIQAVRGMKNLVTTGKKELKGAP----NIVIPESAHFSFDKVADMMGIEVRRASLDSEFRV-DMASIESLIDANTIGLIGIAGNTEFGQIDPIDKLSEIALEN------ELFLHIDAAFGGFVIPFLEKPQPFDFKLPGVTSIAVDPHKMGLSTIPSGALLFRS 257          
BLAST of FC871692 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 66/222 (29.73%), Postives = 101/222 (45.50%), Query Frame = 3
Query:   21 MAAINKNYVDMDEYPVTTELQNRCVNIIAR-LFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL---YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKE 674
            +A ++ N  D   +P     +  C+  +A  L + P    E A G    G +EA +LA  A +     +            I+  A     +EK AR   ++L E  L   Y V D     +++  +T  +  I+G+T  G  +D++ L+D+  +         P+HVDAA GGF APFL   YP   + F L  V S+ V  HK GLV    G +V+R+ E
Sbjct:   31 VAGLHVNLGDPYLFPNAYRAERECIGWLAETLLDHPAP--EEAEGSIVSGGTEANILAAYAAREVTGGRE-----------IIVPATRHFSFEKAARMLRMKLVEAPLRSDYTV-DVDAVQDLISRDTALIVGIVGTTETGSVDDIEALSDVAEDHG------VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHKMGLVPPPAGGIVFRDDE 232          
The following BLAST results are available for this feature:
BLAST of FC871692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
DCEA_LISMO1.792e-5546.46Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCE_YEAST1.375e-4744.21Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
SGPL_YEAST6.022e-1928.57Sphingosine-1-phosphate lyase OS=Saccharomyces cer... [more]
MFNA_UNCMA6.022e-1927.91L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_METLZ5.098e-1833.02L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
MFNA_METTP1.937e-1727.91L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
MFNA_METHJ2.142e-1630.81L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
MFNA_ARCFU1.388e-1528.50L-tyrosine decarboxylase OS=Archaeoglobus fulgidus... [more]
MFNA_METAC2.368e-1528.51L-tyrosine decarboxylase OS=Methanosarcina acetivo... [more]
MFNA_METKA3.093e-1529.73L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1CB12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871692 ID=FC871692; Name=FC871692; organism=Citrus sinensis; type=EST; length=678bp
CTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTACGTTGAC
ATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGTGAACAT
TATAGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGGCTGTCG
GAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGCCTTGCA
TTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCCCTTTGA
CAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGGAGAAAT
TTGCAAGGTATTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGTCGGAAGGC
TACTACGTGATGGACCCAGCCAAAGCTGTAGAAATGGTGGATGAAAACAC
TATCTGTGTTGCTGCTATTCTGGGTTCTACTCTCAATGGAGAATTTGAAG
ATGTCAAGCTCTTGAACGACCTTTTGACAGAGAAGAACAAGGAAACAGGA
TGGGATACTCCAATTCATGTTGATGCTGCTAGTGGTGGCTTCATTGCACC
ATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGGTGAAGA
GTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGTATGCTGGTATTGGT
TGGGTTGTTTGGAGAAACAAAGAAGACT
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