FC871635 | Citrus Genome Database

Overview


Name	FC871635
Unique Name	FC871635
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	697

Libraries


Library Name	Type
AbsCFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  128 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 221

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+ D   LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDH--LAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 360

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  128 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 221

HSP 2 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+  E+ LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDW--EEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 360

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  128 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 221

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+ D   LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDH--LAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 360

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  128 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 221

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+ D   LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  290 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDH--LAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 359

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  117 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 210

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+ D   LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  280 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDH--LAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 349

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  128 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 221

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+ D   LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDH--LAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 360

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90A_CRIGR (Heat shock protein HSP 90-alpha OS=Cricetulus griseus GN=HSP90AA1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFY+ YLVA+ V VI+KHNDD+QY WES A G+F +  DT  EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  128 ISMIGQFGVGFYTAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYMEERRIKEIVKKHSQFIGYPITLF 221

HSP 2 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP ++T EEY +FY SL  D+  E+ LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDW--EEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKN 360

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYI 283
            +++IGQFGVGFYS YLVAD V+V+SKHNDD+QY+WES A G+F ++ DT    L RGTEI+L ++++                   FI++PI +
Sbjct:  115 ISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQL 208

HSP 2 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP EVT+EEYA FY SL  D+ D   LA  HF+ EG +EF+A+LFVP +AP DL+E+    N
Sbjct:  265 LNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDH--LAVKHFSVEGQLEFRAILFVPRRAPMDLFEAKRKKN 334

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HSP82_ASHGO (Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP82 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 40/67 (59.70%), Postives = 57/67 (85.07%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 202
            +++IGQFGVGFYS++LVAD V+VISKHNDD+QY+WES A G+F ++ D  NE +GRGT ++L L+++
Sbjct:  115 VSMIGQFGVGFYSLFLVADRVQVISKHNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKED 181

HSP 2 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K +W RNP EVT+EEY  FY S+  D+ D  PLA  HF+ EG +EF+A+LF+P +AP DL+ES    N
Sbjct:  265 LNKTKPLWTRNPSEVTQEEYNAFYKSISNDWED--PLAVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKN 334

[Close]

BLAST of FC871635 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 2

Query:    2 LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 286
            +++IGQFGVGFYS YLVA+ V VI+KHNDD+QY WES A G+F +  D   EP+GRGT++ LHL+++                   FI +PI ++
Sbjct:  122 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVKVD-HGEPIGRGTKVILHLKEDQTEYIEEKRVKEVVKKHSQFIGYPITLY 215

HSP 2 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 2

Query:  482 LNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTN 697
            LN  K IW RNP +++ EEY +FY SL  D+ D   LA  HF+ EG +EF+A+LF+P +AP DL+E+    N
Sbjct:  281 LNKTKPIWTRNPDDISNEEYGEFYKSLTNDWEDH--LAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKN 350

The following BLAST results are available for this feature:

BLAST of FC871635 vs. ExPASy Swiss-Prot

BLAST of FC871635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118


Match Name	E-value	Identity	Description
HS90A_PIG	4.899e-19	47.37	Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H...	[more]
HS90A_MOUSE	4.899e-19	47.37	Heat shock protein HSP 90-alpha OS=Mus musculus GN...	[more]
HS90A_MACFA	4.899e-19	47.37	Heat shock protein HSP 90-alpha OS=Macaca fascicul...	[more]
HS90A_HUMAN	4.899e-19	47.37	Heat shock protein HSP 90-alpha OS=Homo sapiens GN...	[more]
HS90A_HORSE	4.899e-19	47.37	Heat shock protein HSP 90-alpha (Fragment) OS=Equu...	[more]
HS90A_BOVIN	4.899e-19	47.37	Heat shock protein HSP 90-alpha OS=Bos taurus GN=H...	[more]
HS90A_CRIGR	1.091e-18	46.32	Heat shock protein HSP 90-alpha OS=Cricetulus gris...	[more]
HSP90_SCHPO	1.862e-18	46.81	Heat shock protein 90 homolog OS=Schizosaccharomyc...	[more]
HSP82_ASHGO	1.862e-18	59.70	Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP...	[more]
HS90B_DANRE	2.431e-18	46.32	Heat shock protein HSP 90-beta OS=Danio rerio GN=h...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAK3AD01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3AD01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC871635 ID=FC871635; Name=FC871635; organism=Citrus sinensis; type=EST; length=697bp
CCTCAATCTTATCGGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTG
TTGCTGACTATGTTGAAGTCATTAGCAAACATAATGATGACAAACAGTAT
GTATGGGAATCAAAGGCTGATGGAGCATTTGCAATTTCTGAGGACACATG
GAATGAGCCACTAGGACGCGGAACCGAGATTAAATTGCACCTCAGAGATG
AAGCTGGGGAGTACTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAA
TATTCTGAATTTATCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGT
TGATGTGGATGTTCCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGA
AAGCCGAAAAAGAAGAAGAAACGGAAAAAAGTGAAAGTGAAAGTGAAAGT
GAAGATGAAGATGAAGATGAAGATTCTGAGAAAAAGCCAAAGACCAAGAC
AGTGAAGGAAACTACTTATGAGTGGGAGCTCTTGAACGATGTAAAGGCTA
TATGGCTGCGGAATCCAAAGGAAGTGACAGAGGAAGAGTACGCCAAATTC
TATCACTCTTTAGTAAAGGATTTTAGTGATGAGAAGCCCTTAGCATGGAG
TCACTTCAATGCTGAAGGCGATGTTGAGTTTAAGGCTGTTTTGTTTGTGC
CTCCAAAGGCTCCTCATGATCTTTATGAGAGTTATTATAACACCAAT