FC871617

Overview
NameFC871617
Unique NameFC871617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.311e-44
Identity = 105/281 (37.37%), Postives = 152/281 (54.09%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGE--AVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESID-------------VTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 806
            +H+IDF + QG QW  L+ ALA RPGG P  R+TGI   Q  +     L  VG +L++ A +  V FEF+   A +  +++   L ++P E  AV +N  F LH +    +S     +++L  +K ++PK+VTLVEQE+  N   F  RF E L YY+ MF+S++             + +P  + Q +   +  + R I N++ACEG +RVERHE L +WR R   +GF P  L          +L  +     YRVEENDG L LGW  R +  +SAWK
Sbjct:  300 VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNT--DALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRL----LSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWK 574          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.146e-43
Identity = 102/273 (37.36%), Postives = 156/273 (57.14%), Query Frame = 3
Query:    3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGE--AVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 806
            E +  +H+IDF + QG QW  L+ ALA RP G P  R+TGI      ++    L  VG +L +FA + +V FE++   A +  +++   L ++P E  +VVVN  F LH +    ++     +++L +VK + P++VT+VEQE+  N   F  RF E+L YY+ +F+S++ +    DK      +  + + I N++ACEG +RVERHE L +WR+R   AGF P  L          +L  + S   YRVEEN+G+L LGW  R +  +SAWK
Sbjct:  307 EGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNS--DYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQL----LARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECSPNSQDKM---MSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWK 570          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.803e-43
Identity = 92/266 (34.59%), Postives = 146/266 (54.89%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDD--KQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVL-KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            +HI+DF +  G QW  LL AL+KRPGG P++R+TGI+  Q+       ++  G+RL  F    NVPFEF   A     +    L + PGE  VVN    L + PDE+VS ++ RD +L+L + ++P +    E     N+  F  RF E L +Y+++F+  D T   +D  K R   E+  + RD +++I+CEG ER  R E   +WR R + AGF P  +S  +    ++++ K Y  ++ ++ ++  +  GW+ R +   S WK
Sbjct:  333 LHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNFIAKKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 598          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.660e-43
Identity = 101/273 (37.00%), Postives = 156/273 (57.14%), Query Frame = 3
Query:    3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDV--TRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 806
            E +  +H+IDF + QG QW  L+ ALA RPGG P  R+TGI    + +     L  VG +L++ A + +V FE++   A +  +++   L ++ GE+V VN  F LH +    ++     +R+L  VK + P +VT+VEQE+  N   F  RF E+L YY+ +F+S++     P + + ++ +E + + + I N++ACEG ERVERHE L +WR+R   AGF P  L          +L  +     YRVEEN+G L LGW  R +  +SAW+
Sbjct:  310 EGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNT--DHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSL----LARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVY-LGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ 575          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.285e-42
Identity = 104/276 (37.68%), Postives = 158/276 (57.25%), Query Frame = 3
Query:    3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGE--AVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRD-----VLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            E +  +H+IDF + QG QW  L+ ALA R GG P+ R+TGI    + ++    L  VG +L++ A + +V FE++   A +  +++   L ++P E  AV VN  F LH +   +   E    ++L +VK + P + T+VEQES  N   F  RF E+L YY+ +F+S++      DK  + +E + + + I N++ACEG +RVERHE L +W +RF  +GF P  L    +NA +       L +    YRVEEN+G L LGW  R + T+SAWK
Sbjct:  311 EGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGVPSSQDK--VMSEVY-LGKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLG---SNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAWK 574          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.426e-41
Identity = 98/267 (36.70%), Postives = 154/267 (57.68%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMT-ACEVERQHLRVQPG-EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 806
            +H+ID  +  G QW  L+ ALA RP G P  R+TGI  S +       +  VG +L + A++  V FEF+  A+    +++ + L ++PG E+V VN  F LH +    ++     D+ L  +KS+ P ++T+VEQE+  N + F  RF E+L YY+++F+S++    +D   R+ +E   + R I+N++ACEG +RVERHE L +WR+RF + GF P  +          +L  Y     Y VEEN+G L LGW+ R +  +SAW+
Sbjct:  254 VHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGYSLTD------IQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVFELHRL----LAHPGSIDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQD---RVMSELF-LGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAWR 506          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.426e-41
Identity = 101/271 (37.27%), Postives = 155/271 (57.20%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRD-----VLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            +H+IDF ++QG QW  L+ ALA RPGG P+ R+TGI      +     L  VG +L+  A + +V FE++   A T  +++   L ++P   E+V VN  F LH +    +      D++L +V  + P++ T+VEQES  N+  F  RF E+L YY+ +F+S++      DK  + +E + + + I N++AC+G +RVERHE L +WR+RF  AGF    +    +NA +       L +    YRVEE+DG L LGW  R +  +SAWK
Sbjct:  271 VHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNF--DYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKL----LGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGVPSGQDK--VMSEVY-LGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIG---SNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWK 529          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.474e-41
Identity = 98/273 (35.90%), Postives = 154/273 (56.41%), Query Frame = 3
Query:    3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGE--AVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 806
            E +  +H+IDF + QG QW  LL ALA RP G P  R+TGI      ++    L  VG +L++   + NV FE++   A +  +++   L ++P E  +VVVN  F LH +    ++     ++++ +VK + P+++T+VEQE+  N   F  RF E+L YY+ +F+S++ +    DK      +  + + I N++ACEG +RVE HE L +WR+R   +GF P  L          +L  + S   YRVEEN+G+L LGW  R +  +SAWK
Sbjct:  314 EGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNS--DYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKL----LARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESSPNNQDKM---MSEMYLGKQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAWK 577          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.844e-41
Identity = 90/264 (34.09%), Postives = 142/264 (53.79%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKD-YDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            +HIIDF I  G QW  L+ AL+KR  G PL+R+TGI+  QS       ++  G+RL  F    NVPFE+   A     +    L +  GE  VVN    L + PDE+VS  + RD  L+L + ++P +    E     N+  F  RF E L + +++F+  + T   DD  R   E+  + RD +++IACEG ER  R E   +W+ R + AGF P +LS  +    ++++K+ Y  ++ ++ ++  ++ GW+ R +   S WK
Sbjct:  316 LHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK 579          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.968e-41
Identity = 103/278 (37.05%), Postives = 154/278 (55.40%), Query Frame = 3
Query:    3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGI-----DDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 806
            E +  +H+IDF + QG QW  L+ ALA R GG P  R+TGI     D+S   H        VG +L++ A + +V FE++   A +  +++   L ++P   EAV VN  F LH +       E    ++L +VK + P + T+VEQES  N   F  RF E+L YY+ +F+S++      DK  + +E + + + I N++ACEG +RVERHE L +W +RF  +G  P  L          +L  ++S   YRVEE++G L LGW  R + T+SAWK
Sbjct:  318 EGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHE-------VGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRPGGIE----KVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQDK--VMSEVY-LGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWK 581          
The following BLAST results are available for this feature:
BLAST of FC871617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GAI_SOLLC3.311e-4437.37DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
GAIP_CUCMA2.146e-4337.36DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
SCL11_ARATH2.803e-4334.59Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
GAI1_VITVI3.660e-4337.00DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
RGA2_BRACM5.285e-4237.68DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
RGL1_ARATH3.426e-4136.70DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
GAI_ARATH3.426e-4137.27DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
GAIPB_CUCMA4.474e-4135.90DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
SCL30_ARATH5.844e-4134.09Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
RGA_ARATH9.968e-4137.05DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3AC01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3AC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871617 ID=FC871617; Name=FC871617; organism=Citrus sinensis; type=EST; length=810bp
TGGAGAATGAACATATAATTCACATCATTGATTTCCAGATTGCTCAGGGC
ACCCAGTGGATGTTCCTCCTCCATGCTCTTGCAAAACGGCCTGGTGGATC
CCCACTTGTCCGCATAACTGGGATTGATGATTCCCAATCAACCCATGCTC
GTGGTGGAGGACTTGATATTGTAGGGAAGAGACTGTCGGAGTTTGCTGCA
TCCTGCAATGTCCCATTTGAATTCCAAGATACTGCCATGACTGCTTGTGA
GGTTGAACGACAACATCTAAGGGTTCAACCTGGGGAAGCTGTGGTGGTGA
ATTTTCCTTTTGTGCTGCACCACATGCCTGATGAGAGTGTGAGTACTGAG
AATCATAGAGACAGGCTATTGAGACTGGTTAAAAGCTTGTCACCCAAAGT
TGTGACCCTTGTTGAACAAGAATCCAAAACCAATACATCTCCATTCTTTC
ACAGGTTCCTTGAGACACTGGATTATTATACAGCTATGTTTGAGAGCATT
GATGTTACTCGTCCAAGGGATGACAAGCAACGTATCAGTGCAGAGCAGCA
CTGTGTGGCCCGGGACATAGTCAACATGATAGCTTGTGAGGGGATTGAAA
GGGTGGAACGGCATGAACTTCTTGGTAAGTGGAGATCACGTTTTATGATG
GCAGGATTTACCCCATATCGATTGAGTCCTTTGGTGACAAATGCTGTGAG
GGATGTATTGAAAGACTATGATAGTAACTATAGAGTTGAAGAGAATGATG
GGGCTCTTTATCTCGGCTGGAGAAACAGAGCTATGGCCACCTCTTCTGCA
TGGAAATGAA
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