FC871617

Overview
NameFC871617
Unique NameFC871617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20
Identity = 81/293 (27.65%), Postives = 137/293 (46.76%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDDSQSTHARGGG-LDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPG---EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE-----------SKTNTSPFFHR-FLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGA-----------LYLGWRNRAMATSSAWK 806
            +HI+D      TQW  LL ALA R    +P + IT +  + +  A     +  +G+RL +FA    VPF F+    +    +++   L ++ G    A+ VN    L             RD  +  ++ L P+VVT+VE+E           S+ +T   F + F E L +++A  +S++ + P+   +R+S E+  V R IV++++C   +  ER E    W  R   AGF+P   S  V + VR +L+ Y   + + +  GA            +L W+ + +  +SAWK
Sbjct:  318 LHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALR-------GVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLER-AVGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVWASAWK 602          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 78/291 (26.80%), Postives = 133/291 (45.70%), Query Frame = 3
Query:   21 HIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDD---SQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSP----------------FFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEE---NDGA----LYLGWRNRAMATSSAWK 806
            HI+D      TQW  LL ALA R    +P + IT +     S  T A    +  +G+R+ +FA    VPF F+    +    E++   L ++ G A        ++ +          RD     ++ L P+VVT+VE+E+    S                 F   F E L +++A  +S++ + P+   +R++ E+    R IV++++C   E +ER E    W  R   AGF+P   S  V + VR +L+ Y   + + E   +D A    ++L W+ + +  +SAW+
Sbjct:  312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGA-GRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWR 601          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 78/291 (26.80%), Postives = 133/291 (45.70%), Query Frame = 3
Query:   21 HIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDD---SQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSP----------------FFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEE---NDGA----LYLGWRNRAMATSSAWK 806
            HI+D      TQW  LL ALA R    +P + IT +     S  T A    +  +G+R+ +FA    VPF F+    +    E++   L ++ G A        ++ +          RD     ++ L P+VVT+VE+E+    S                 F   F E L +++A  +S++ + P+   +R++ E+    R IV++++C   E +ER E    W  R   AGF+P   S  V + VR +L+ Y   + + E   +D A    ++L W+ + +  +SAW+
Sbjct:  312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGA-GRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWR 601          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL27_ARATH (Scarecrow-like protein 27 OS=Arabidopsis thaliana GN=SCL27 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 75/275 (27.27%), Postives = 125/275 (45.45%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGG-----SPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQ---HLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGK---WRSRFMMAGFTPYRLSPLVTNAVRDVL-KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            IHIIDF +  G QW  L+  LA   GG     +  +++T      ST +    L    + L  FA    +PFE +  ++            LR    EA+ VN P         SV++  +   +LR +K LSP +V   ++    N +PF +  + +L Y+T++ ES+D  + +DD    S E+  V   I  ++       ++RH  + +   WR  F   GF+P  LS +       +L ++    + VE+   +L + W+ + + T SAWK
Sbjct:  383 IHIIDFDVGYGGQWSSLMQELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNLPV-------NSVAS-GYLPLILRFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDS---SIERFWVQPSIEKLL-------MKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWK 639          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL32_ARATH (Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 76/281 (27.05%), Postives = 139/281 (49.47%), Query Frame = 3
Query:    3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSP-LVRITGIDDSQSTHAR---GGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER---QHLRVQPG---EAVVVNFPFVLHHMPDESV--STENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNY--RVEENDGALYLGWRNRAMATSSAW 803
            E    +HI+D  +    Q   L+ A+A R    P L+++T +  S S H         + +G +L  FA + N+  EF     T  +      Q LR+ P    EA+VVN   +L ++P+E +  S+ + R   L+ ++SL+P++VTL+E++    +    +R     +Y+   F++ D T   + ++   AE   ++  I N++A EG ERVER E   +W  R   A F   R+       V+ +L+++   +  + E++D +L L W+  ++  ++ W
Sbjct:  133 EGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVV--SSSDHFPPFINISYEELGSKLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLKSAFNYFWIPFDTTD-TFMSEQRRWYEAE---ISWKIENVVAKEGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVVFATVW 407          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL22_ARATH (Scarecrow-like protein 22 OS=Arabidopsis thaliana GN=SCL22 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 77/276 (27.90%), Postives = 116/276 (42.03%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALA---KRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQ----DTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE-SKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAV-----RDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            IHI+DF I  G QW  L+  LA    R   +P ++IT    S ST +    L    + L  FA    V FE +    +  +          R    EA+ VN P         S     +   +LR +K +SP VV   ++   + N +PF +  +  L YYT++ ES+D     + +   S E+ CV   I  ++      R    E    WRS F   GFTP  LS            R+ ++ +    R + +  +L L W+ + + T SAWK
Sbjct:  361 IHIVDFDIGYGGQWASLIQELAGKRNRSSSAPSLKITAFA-SPSTVSDEFELRFTEENLRSFAGETGVSFEIELLNMEILLNPTYWPLSLFRSSEKEAIAVNLPI--------SSMVSGYLPLILRFLKQISPNVVVCSDRSCDRNNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAATSIERFCVQPSIQKLLT----NRYRWMERSPPWRSLFGQCGFTPVTLSQTAETQAEYLLQRNPMRGFHLEKR-QSSSPSLVLCWQRKELVTVSAWK 622          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: NSP1_MEDTR (Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.506e-16
Identity = 73/286 (25.52%), Postives = 128/286 (44.76%), Query Frame = 3
Query:    6 NEHIIHIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDDSQSTH---------ARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE-VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESK---TNTSPFFHRFLETLDYYTAMFESID---VTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNY--RVEENDGALYLGWRNRAMATSSAWK 806
            N   +HI+D  ++ G QW   L AL++RPGG  PLVR+T ++ S ST          + G   D     L  +A S NV  + +       + +  + +     E ++V   F LHH+   + +  + R   L++++ + PK V L E   +   ++   F   F   ++Y     +S       R  D+++ +  E    A+ + N        + E +E   KW  R   AGF          +  R +L+ YD+N+  +VEEN  ++ L W+++ ++  S WK
Sbjct:  277 NLRTLHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVNASSSTENDQNMETPFSIGPCGDTFSSGLLGYAQSLNVNLQIKKLDNHPLQTLNAKSVDTSSDETLIVCAQFRLHHL---NHNNPDERSEFLKVLRGMEPKGVILSENNMECCCSSCGDFATGFSRRVEYLWRFLDSTSSAFKNRDSDERKMMEGE---AAKALTN--------QREMNERREKWCERMKEAGFAGEVFGEDAIDGGRALLRKYDNNWEMKVEENSTSVELWWKSQPVSFCSLWK 548          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL29_ARATH (Scarecrow-like protein 29 OS=Arabidopsis thaliana GN=SCL29 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 74/269 (27.51%), Postives = 116/269 (43.12%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKR-PGGSPLVRITGIDD--SQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHR-FLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLG--WRNRAMATSSAWK 806
            +HIID  ++ G QW  LL AL+ R  G  P VRIT I D  +    + G      G +L  FA S  +  +           + Q +   P E ++V   F LHH+     S  + R   L+ V+SL PK V L E   + ++S  F   F + L+Y     +S         K+  S E+  +  +   ++   G    + +E   KW  R   AGF          +  + +L+ YD+N+ +   DG  + G  W+  A++  S WK
Sbjct:  259 LHIIDIGVSHGMQWPTLLEALSCRLEGPPPRVRITVISDLTADIPFSVGPPGYNYGSQLLGFARSLKINLQISVLD------KLQLIDTSPHENLIVCAQFRLHHLKH---SINDERGETLKAVRSLRPKGVVLCENNGECSSSADFAAGFSKKLEYVWKFLDSTS----SGFKEENSEERKLMEGEATKVLMNAG----DMNEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWEIRMEDGDTFAGLMWKGEAVSFCSLWK 510          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL15_ARATH (Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 68/270 (25.19%), Postives = 117/270 (43.33%), Query Frame = 3
Query:   18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITG-IDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE-VERQHLRVQPGE-AVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKT---NTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVL-KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806
            +H++DF+I  G Q+  L+  + ++      +R+T  + +  +   R     +V + L++FAA   + F+ +   M   E +  + +R   GE  VV+  P +   +   +    N        ++ +SPKVV  V+ E  T    +  F   F+  L++YT + ES+D   P  D  +   E   V R  ++       +R  RH     WR  F  AG  P + S         +L K     + V +  G L L W  RA+  +SAW+
Sbjct:  232 VHVVDFEIGFGGQYASLMREITEKSVSGGFLRVTAVVAEECAVETR-----LVKENLTQFAAEMKIRFQIEFVLMKTFEMLSFKAIRFVEGERTVVLISPAIFRRLSGITDFVNN--------LRRVSPKVVVFVDSEGWTEIAGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAF-VLRPKISAAVETAADR--RHTGEMTWREAFCAAGMRPIQQSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 485          
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL6_ARATH (Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SLC6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 65/266 (24.44%), Postives = 113/266 (42.48%), Query Frame = 3
Query:   12 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYD-SNYRVEENDGALYLGWRNRAMATSSAWK 806
            H +HIIDF I  G QW  L+  L  R   +PL     +  S + H +   L      L  FA+  N+  + Q  ++               EAV VN           S ++ +H   +LR VK LSP ++   ++  +    PF  +   +L  +TA+FES+D      D  +   E+  +  +I  ++  +    +ER  +   W++ F+  GF+P   S    +    +++      + VE+   +L L W+   +   SAW+
Sbjct:  305 HRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLE-LGFTQDNLKHFASEINISLDIQVLSLDLLG-SISWPNSSEKEAVAVNI----------SAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQ-KIERFLIQPEIEKLV-LDRSRPIERPMM--TWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWR 554          
The following BLAST results are available for this feature:
BLAST of FC871617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
SHR2_ORYSJ1.146e-2027.65Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japoni... [more]
SHR1_ORYSJ4.354e-2026.80Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japoni... [more]
SHR1_ORYSI4.354e-2026.80Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica... [more]
SCL27_ARATH4.814e-1927.27Scarecrow-like protein 27 OS=Arabidopsis thaliana ... [more]
SCL32_ARATH8.211e-1927.05Scarecrow-like protein 32 OS=Arabidopsis thaliana ... [more]
SCL22_ARATH2.389e-1827.90Scarecrow-like protein 22 OS=Arabidopsis thaliana ... [more]
NSP1_MEDTR6.506e-1625.52Nodulation-signaling pathway 1 protein OS=Medicago... [more]
SCL29_ARATH5.508e-1527.51Scarecrow-like protein 29 OS=Arabidopsis thaliana ... [more]
SCL15_ARATH2.093e-1425.19Scarecrow-like protein 15 OS=Arabidopsis thaliana ... [more]
SCL6_ARATH6.089e-1424.44Scarecrow-like protein 6 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3AC01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3AC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871617 ID=FC871617; Name=FC871617; organism=Citrus sinensis; type=EST; length=810bp
TGGAGAATGAACATATAATTCACATCATTGATTTCCAGATTGCTCAGGGC
ACCCAGTGGATGTTCCTCCTCCATGCTCTTGCAAAACGGCCTGGTGGATC
CCCACTTGTCCGCATAACTGGGATTGATGATTCCCAATCAACCCATGCTC
GTGGTGGAGGACTTGATATTGTAGGGAAGAGACTGTCGGAGTTTGCTGCA
TCCTGCAATGTCCCATTTGAATTCCAAGATACTGCCATGACTGCTTGTGA
GGTTGAACGACAACATCTAAGGGTTCAACCTGGGGAAGCTGTGGTGGTGA
ATTTTCCTTTTGTGCTGCACCACATGCCTGATGAGAGTGTGAGTACTGAG
AATCATAGAGACAGGCTATTGAGACTGGTTAAAAGCTTGTCACCCAAAGT
TGTGACCCTTGTTGAACAAGAATCCAAAACCAATACATCTCCATTCTTTC
ACAGGTTCCTTGAGACACTGGATTATTATACAGCTATGTTTGAGAGCATT
GATGTTACTCGTCCAAGGGATGACAAGCAACGTATCAGTGCAGAGCAGCA
CTGTGTGGCCCGGGACATAGTCAACATGATAGCTTGTGAGGGGATTGAAA
GGGTGGAACGGCATGAACTTCTTGGTAAGTGGAGATCACGTTTTATGATG
GCAGGATTTACCCCATATCGATTGAGTCCTTTGGTGACAAATGCTGTGAG
GGATGTATTGAAAGACTATGATAGTAACTATAGAGTTGAAGAGAATGATG
GGGCTCTTTATCTCGGCTGGAGAAACAGAGCTATGGCCACCTCTTCTGCA
TGGAAATGAA
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