FC871617
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20 Identity = 81/293 (27.65%), Postives = 137/293 (46.76%), Query Frame = 3 Query: 18 IHIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDDSQSTHARGGG-LDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPG---EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE-----------SKTNTSPFFHR-FLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGA-----------LYLGWRNRAMATSSAWK 806 +HI+D TQW LL ALA R +P + IT + + + A + +G+RL +FA VPF F+ + +++ L ++ G A+ VN L RD + ++ L P+VVT+VE+E S+ +T F + F E L +++A +S++ + P+ +R+S E+ V R IV++++C + ER E W R AGF+P S V + VR +L+ Y + + + GA +L W+ + + +SAWK Sbjct: 318 LHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALR-------GVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLER-AVGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVWASAWK 602
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20 Identity = 78/291 (26.80%), Postives = 133/291 (45.70%), Query Frame = 3 Query: 21 HIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDD---SQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSP----------------FFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEE---NDGA----LYLGWRNRAMATSSAWK 806 HI+D TQW LL ALA R +P + IT + S T A + +G+R+ +FA VPF F+ + E++ L ++ G A ++ + RD ++ L P+VVT+VE+E+ S F F E L +++A +S++ + P+ +R++ E+ R IV++++C E +ER E W R AGF+P S V + VR +L+ Y + + E +D A ++L W+ + + +SAW+ Sbjct: 312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGA-GRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWR 601
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20 Identity = 78/291 (26.80%), Postives = 133/291 (45.70%), Query Frame = 3 Query: 21 HIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDD---SQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSP----------------FFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEE---NDGA----LYLGWRNRAMATSSAWK 806 HI+D TQW LL ALA R +P + IT + S T A + +G+R+ +FA VPF F+ + E++ L ++ G A ++ + RD ++ L P+VVT+VE+E+ S F F E L +++A +S++ + P+ +R++ E+ R IV++++C E +ER E W R AGF+P S V + VR +L+ Y + + E +D A ++L W+ + + +SAW+ Sbjct: 312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGA-GRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWR 601
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL27_ARATH (Scarecrow-like protein 27 OS=Arabidopsis thaliana GN=SCL27 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19 Identity = 75/275 (27.27%), Postives = 125/275 (45.45%), Query Frame = 3 Query: 18 IHIIDFQIAQGTQWMFLLHALAKRPGG-----SPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQ---HLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGK---WRSRFMMAGFTPYRLSPLVTNAVRDVL-KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806 IHIIDF + G QW L+ LA GG + +++T ST + L + L FA +PFE + ++ LR EA+ VN P SV++ + +LR +K LSP +V ++ N +PF + + +L Y+T++ ES+D + +DD S E+ V I ++ ++RH + + WR F GF+P LS + +L ++ + VE+ +L + W+ + + T SAWK Sbjct: 383 IHIIDFDVGYGGQWSSLMQELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNLPV-------NSVAS-GYLPLILRFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDS---SIERFWVQPSIEKLL-------MKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWK 639
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL32_ARATH (Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19 Identity = 76/281 (27.05%), Postives = 139/281 (49.47%), Query Frame = 3 Query: 3 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSP-LVRITGIDDSQSTHAR---GGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER---QHLRVQPG---EAVVVNFPFVLHHMPDESV--STENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNY--RVEENDGALYLGWRNRAMATSSAW 803 E +HI+D + Q L+ A+A R P L+++T + S S H + +G +L FA + N+ EF T + Q LR+ P EA+VVN +L ++P+E + S+ + R L+ ++SL+P++VTL+E++ + +R +Y+ F++ D T + ++ AE ++ I N++A EG ERVER E +W R A F R+ V+ +L+++ + + E++D +L L W+ ++ ++ W Sbjct: 133 EGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVV--SSSDHFPPFINISYEELGSKLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLKSAFNYFWIPFDTTD-TFMSEQRRWYEAE---ISWKIENVVAKEGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVVFATVW 407
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL22_ARATH (Scarecrow-like protein 22 OS=Arabidopsis thaliana GN=SCL22 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18 Identity = 77/276 (27.90%), Postives = 116/276 (42.03%), Query Frame = 3 Query: 18 IHIIDFQIAQGTQWMFLLHALA---KRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQ----DTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE-SKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAV-----RDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806 IHI+DF I G QW L+ LA R +P ++IT S ST + L + L FA V FE + + + R EA+ VN P S + +LR +K +SP VV ++ + N +PF + + L YYT++ ES+D + + S E+ CV I ++ R E WRS F GFTP LS R+ ++ + R + + +L L W+ + + T SAWK Sbjct: 361 IHIVDFDIGYGGQWASLIQELAGKRNRSSSAPSLKITAFA-SPSTVSDEFELRFTEENLRSFAGETGVSFEIELLNMEILLNPTYWPLSLFRSSEKEAIAVNLPI--------SSMVSGYLPLILRFLKQISPNVVVCSDRSCDRNNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAATSIERFCVQPSIQKLLT----NRYRWMERSPPWRSLFGQCGFTPVTLSQTAETQAEYLLQRNPMRGFHLEKR-QSSSPSLVLCWQRKELVTVSAWK 622
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: NSP1_MEDTR (Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.506e-16 Identity = 73/286 (25.52%), Postives = 128/286 (44.76%), Query Frame = 3 Query: 6 NEHIIHIIDFQIAQGTQWMFLLHALAKRPGG-SPLVRITGIDDSQSTH---------ARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE-VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESK---TNTSPFFHRFLETLDYYTAMFESID---VTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNY--RVEENDGALYLGWRNRAMATSSAWK 806 N +HI+D ++ G QW L AL++RPGG PLVR+T ++ S ST + G D L +A S NV + + + + + + E ++V F LHH+ + + + R L++++ + PK V L E + ++ F F ++Y +S R D+++ + E A+ + N + E +E KW R AGF + R +L+ YD+N+ +VEEN ++ L W+++ ++ S WK Sbjct: 277 NLRTLHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVNASSSTENDQNMETPFSIGPCGDTFSSGLLGYAQSLNVNLQIKKLDNHPLQTLNAKSVDTSSDETLIVCAQFRLHHL---NHNNPDERSEFLKVLRGMEPKGVILSENNMECCCSSCGDFATGFSRRVEYLWRFLDSTSSAFKNRDSDERKMMEGE---AAKALTN--------QREMNERREKWCERMKEAGFAGEVFGEDAIDGGRALLRKYDNNWEMKVEENSTSVELWWKSQPVSFCSLWK 548
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL29_ARATH (Scarecrow-like protein 29 OS=Arabidopsis thaliana GN=SCL29 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15 Identity = 74/269 (27.51%), Postives = 116/269 (43.12%), Query Frame = 3 Query: 18 IHIIDFQIAQGTQWMFLLHALAKR-PGGSPLVRITGIDD--SQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHR-FLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLG--WRNRAMATSSAWK 806 +HIID ++ G QW LL AL+ R G P VRIT I D + + G G +L FA S + + + Q + P E ++V F LHH+ S + R L+ V+SL PK V L E + ++S F F + L+Y +S K+ S E+ + + ++ G + +E KW R AGF + + +L+ YD+N+ + DG + G W+ A++ S WK Sbjct: 259 LHIIDIGVSHGMQWPTLLEALSCRLEGPPPRVRITVISDLTADIPFSVGPPGYNYGSQLLGFARSLKINLQISVLD------KLQLIDTSPHENLIVCAQFRLHHLKH---SINDERGETLKAVRSLRPKGVVLCENNGECSSSADFAAGFSKKLEYVWKFLDSTS----SGFKEENSEERKLMEGEATKVLMNAG----DMNEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWEIRMEDGDTFAGLMWKGEAVSFCSLWK 510
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL15_ARATH (Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14 Identity = 68/270 (25.19%), Postives = 117/270 (43.33%), Query Frame = 3 Query: 18 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITG-IDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE-VERQHLRVQPGE-AVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKT---NTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVL-KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 806 +H++DF+I G Q+ L+ + ++ +R+T + + + R +V + L++FAA + F+ + M E + + +R GE VV+ P + + + N ++ +SPKVV V+ E T + F F+ L++YT + ES+D P D + E V R ++ +R RH WR F AG P + S +L K + V + G L L W RA+ +SAW+ Sbjct: 232 VHVVDFEIGFGGQYASLMREITEKSVSGGFLRVTAVVAEECAVETR-----LVKENLTQFAAEMKIRFQIEFVLMKTFEMLSFKAIRFVEGERTVVLISPAIFRRLSGITDFVNN--------LRRVSPKVVVFVDSEGWTEIAGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAF-VLRPKISAAVETAADR--RHTGEMTWREAFCAAGMRPIQQSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 485
BLAST of FC871617 vs. ExPASy Swiss-Prot
Match: SCL6_ARATH (Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SLC6 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14 Identity = 65/266 (24.44%), Postives = 113/266 (42.48%), Query Frame = 3 Query: 12 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYD-SNYRVEENDGALYLGWRNRAMATSSAWK 806 H +HIIDF I G QW L+ L R +PL + S + H + L L FA+ N+ + Q ++ EAV VN S ++ +H +LR VK LSP ++ ++ + PF + +L +TA+FES+D D + E+ + +I ++ + +ER + W++ F+ GF+P S + +++ + VE+ +L L W+ + SAW+ Sbjct: 305 HRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLE-LGFTQDNLKHFASEINISLDIQVLSLDLLG-SISWPNSSEKEAVAVNI----------SAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQ-KIERFLIQPEIEKLV-LDRSRPIERPMM--TWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWR 554 The following BLAST results are available for this feature:
BLAST of FC871617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871617 ID=FC871617; Name=FC871617; organism=Citrus sinensis; type=EST; length=810bpback to top |