FC871616

Overview
NameFC871616
Unique NameFC871616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    7 TERHAVIVHVLDQNRALVDAPDME--RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            T + AVIV ++D  RAL+D+P  E  R  + +  + LT I + +PR  +   +    +  DV NKW SS+W +KL   K R+ LNDFDR  +M  K ++   V   +AK  K
Sbjct:   22 TGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   13 RHAVIVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKKENAA 348
            R   IV V+DQNR LVD P   + R +     L LT  +I  P     + +  A  ++D+K +W+ S W  K     KR+SLNDFDR KL  AK ++  L+      LKK   A
Sbjct:   23 RLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKA 136          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   19 AVIVHVLDQNRALVDAPD--MERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAK 327
            A IV ++DQ + L+D P   + R  +N  ++ LT +   +PR  +  T+      A V  KW +SSW +K+   ++RA+L DF+R ++M+ + +K   V++ LAK
Sbjct:   33 AAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   19 AVIVHVLDQNRALVDAPD--MERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAK 327
            A IV ++DQ + L+D P   + R  +N  ++ LT +   +PR  +  T+      A V  KW +SSW +K+   ++RA+L DF+R ++M+ + +K   V++ LAK
Sbjct:   33 AAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   19 AVIVHVLDQNRALVDAPD--MERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKL 330
            AVI+ VLDQNRALV  P   +ER  +NFK ++LT +K++I R  +  TLI A++ AD++ K  + S  +K+     +++  DF+R K  L + K    V  E+ KL
Sbjct:   27 AVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
The following BLAST results are available for this feature:
BLAST of FC871616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL14_SCHPO2.319e-1237.5060S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14_DROME8.810e-1237.7260S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14B_YEAST1.503e-1133.3360S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14A_YEAST1.963e-1133.3360S ribosomal protein L14-A OS=Saccharomyces cerev... [more]
RL14_DICDI3.348e-1139.6260S ribosomal protein L14 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BF11FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871616 ID=FC871616; Name=FC871616; organism=Citrus sinensis; type=EST; length=391bp
AAAAAAACAGAAAGGCACGCCGTCATCGTACATGTCTTAGATCAAAACAG
AGCTCTAGTTGATGCCCCTGATATGGAGAGAGGCCAAATGAACTTCAAGA
GGCTTTCACTGACTGATATCAAAATTGACATTCCCCGTGTACCGAAGAAG
AAGACATTGATTGATGCTATGGAGAAGGCTGATGTTAAGAACAAGTGGGA
GAGTAGCTCTTGGGGAAGAAAGCTGATTGTTCACAAGAAGAGAGCATCAC
TTAACGACTTTGACAGGATCAAGCTTATGTTGGCCAAGATCAAGAAGGGA
GGCTTGGTCAGGCAGGAGCTTGCGAAGCTGAAGAAGGAGAATGCAGCCTA
ATGCTATCTGAACTGTAGCTTCCAACTTTGTTATGATGATG
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