FC871604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ATM1_KLULA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Kluyveromyces lactis GN=ATM1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.025e-17 Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQAWFPFSLIEHVK 463 TA+VG SG+GKSTI++L+ RFY+P GRI + G+D+R D E R+V +V Q+ LF+ ++ EN+ +G N + LP+G +T +AIAR LLK+ PI+ DE + + SL++ +K Sbjct: 485 TAIVGPSGSGKSTILRLVFRFYDPQQGRILLDGKDIRELDLDELRRIVGVVPQDTPLFNDTIWENVKFG--RINATDNEIVTAIEKAQLSDLIHKLPKGTETIVGERGLMISGGEKQRLAIARVLLKDTPIMFFDEATSALDTHTEQSLLKTIK 636
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17 Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 A VGSSG GKST +QLL RFY+P G++ + G D R + + IV+QEPVLF+ S+ +NI YG + + SLP+ Y+T IAIARA++++ IL+LDE + Sbjct: 1110 AFVGSSGCGKSTSIQLLERFYDPDHGKVMIDGHDSRKVNIQFLRSNIGIVSQEPVLFACSIKDNIKYGDNTQEIPMERIIAAAKKAQVHDFVMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEAT 1246 HSP 2 Score: 86.2705 bits (212), Expect = 1.998e-16 Identity = 55/136 (40.44%), Postives = 71/136 (52.21%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILD 406 TALVG SGAGKST +QL+ RFY PT G +TV D+R+ +W R + IV QEPVLF ++ E I YG E+ + LPQ +DT +AIARAL++N IL+LD Sbjct: 451 TALVGPSGAGKSTALQLIHRFYGPTEGMVTVESHDIRS-SHIQWLRNQIGIVEQEPVLFFHTIAEKIRYG--REDATMEDLIQAAKEANAYNFIMDLPQQFDTLVGEGGGQMSGGQKQRVAIARALIRNPKILLLD 583
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCBB_MOUSE (Bile salt export pump OS=Mus musculus GN=Abcb11 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17 Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILD 406 TA VGSSGAGKST +QL+ RFY+P G +T+ G D+R+ + W R + IV QEPVLFS ++ ENI G E + +LPQ +DT +AIARAL++ IL+LD Sbjct: 451 TAFVGSSGAGKSTALQLIQRFYDPCEGMVTLDGHDIRSLN-IRWLRDQIGIVEQEPVLFSTTIAENIRLG--REEATMEDIVQAAKDANAYNFIMALPQQFDTLVGEGGGQMSGGQKQRVAIARALIRKPKILLLD 583 HSP 2 Score: 87.0409 bits (214), Expect = 1.171e-16 Identity = 50/137 (36.50%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 A VGSSG GKST +QLL RFY+P G + + G D + + + IV+QEPVLF S+ +NI YG + +S SLP+ Y+T IAIARA++++ IL+LDE + Sbjct: 1110 AFVGSSGCGKSTSIQLLERFYDPDQGTVMIDGHDSKKVNVQFLRSNIGIVSQEPVLFDCSIMDNIKYGDNTKEISVERAIAAAKQAQLHDFVMSLPEKYETNVGIQGSQLSRGEKQRIAIARAIVRDPKILLLDEAT 1246
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17 Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 A+VG SG+GKST++ L+ RFY+P+ G + + G D+++ + + +++V QEP LFS S+ ENI YG +EN S + +GY T +AIARA+LK+ +L+LDE + Sbjct: 1038 AVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHENIKYG--NENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEAT 1172 HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16 Identity = 52/143 (36.36%), Postives = 73/143 (51.05%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 A VG SG+GKSTI+ ++ RFYEP G I + G D++ K +W R + +V+QEP LF+ ++ NI G E + SLP GY+T IAIARA+L+N IL+LDE + + A Sbjct: 404 AFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNL-KLKWLREQMGLVSQEPALFATTIASNILLG--KEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 543
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: TAP2_RAT (Antigen peptide transporter 2 OS=Rattus norvegicus GN=Tap2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17 Identity = 55/143 (38.46%), Postives = 73/143 (51.05%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 TALVG +G+GKST+ LL Y+PTGG++ + GE L +D R V +V QEPVLFS SV +NIAYGL D + G +T +AIARAL++N +LILDE + + A Sbjct: 499 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGEPLVQYDHHYLHRQVVLVGQEPVLFSGSVKDNIAYGLRD--CEDAQVMAAAQAACADDFIGEMTNGINTEIGEKGSQLAVGQKQRLAIARALVRNPRVLILDEATSALDA 639
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17 Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 TALVG SG GKST++ ++ RFY+P G IT G D++ D + ++ V+QEPVLF+ S+ +NI +G +++ + GYDT +AIARA+++N IL+LDE + + A Sbjct: 697 TALVGPSGGGKSTVIAMIERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLFAGSIKDNITFG--NDSATMDQIISAAEKANAHSFIEEFENGYDTIVGERGVRLSGGQKQRVAIARAMIQNPMILLLDEATSALDA 837
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17 Identity = 54/142 (38.03%), Postives = 70/142 (49.30%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 ALVG SG GK+TI L+ RFY+P G+I + G L + +SIV+QEP+LF+ SV ENIAYG D S + P Y+T IAIARALL N +L+LDE + + A Sbjct: 428 ALVGPSGGGKTTIANLIERFYDPLKGKILLNGVSLMEISHQYLHKQISIVSQEPILFNCSVEENIAYGF-DGEASFTDIENAAKMANAHEFIEAFPDKYNTVVGERGLRLSGGQKQRIAIARALLTNPSVLLLDEATSALDA 568
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: Y019_MYCPN (Putative ABC transporter ATP-binding protein MG015 homolog OS=Mycoplasma pneumoniae GN=MPN_019 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16 Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFS 421 A+VG +GAGKSTI+ LL +FY+P G+I + ++ ++ W +SIV Q+P LFS ++ ENI G D + LPQGY+T + IARA+++NAP+L+LDE + S Sbjct: 427 AIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEISEVSETAWREKISIVLQDPFLFSGTIKENIRMGRQD--ATDEEIIEACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSS 563
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: TAP1_RAT (Antigen peptide transporter 1 OS=Rattus norvegicus GN=Tap1 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16 Identity = 52/143 (36.36%), Postives = 71/143 (49.65%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 TALVG +G+GKST+ LL Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL + PQGYDT +A+ARAL++ +LILD+ + + A Sbjct: 511 TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDDATSALDA 652
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFA (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16 Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 TA+VG SG+GKS++++L+ RFYEP G+I + G L+ + ++ R +++V Q+ +LF S+ ENIAYG + VS LP+G +AIARA+LK+APILILDE + Sbjct: 376 TAIVGRSGSGKSSLIKLIPRFYEPESGQILLDGHPLQDYLLADLRRQIALVGQQVMLFDGSIAENIAYGEMRQVVS-EEIERVVVDANAQDFVNQLPEGLQFQVGVKGGRLSGGQRQRLAIARAMLKDAPILILDEAT 512 The following BLAST results are available for this feature:
BLAST of FC871604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 304
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871604 ID=FC871604; Name=FC871604; organism=Citrus sinensis; type=EST; length=754bpback to top |