FC871604

Overview
NameFC871604
Unique NameFC871604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ATM1_KLULA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Kluyveromyces lactis GN=ATM1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQAWFPFSLIEHVK 463
            TA+VG SG+GKSTI++L+ RFY+P  GRI + G+D+R  D  E  R+V +V Q+  LF+ ++ EN+ +G    N +                   LP+G +T                +AIAR LLK+ PI+  DE + +       SL++ +K
Sbjct:  485 TAIVGPSGSGKSTILRLVFRFYDPQQGRILLDGKDIRELDLDELRRIVGVVPQDTPLFNDTIWENVKFG--RINATDNEIVTAIEKAQLSDLIHKLPKGTETIVGERGLMISGGEKQRLAIARVLLKDTPIMFFDEATSALDTHTEQSLLKTIK 636          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 2
Query:    5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415
            A VGSSG GKST +QLL RFY+P  G++ + G D R  +       + IV+QEPVLF+ S+ +NI YG   + +                   SLP+ Y+T                IAIARA++++  IL+LDE +
Sbjct: 1110 AFVGSSGCGKSTSIQLLERFYDPDHGKVMIDGHDSRKVNIQFLRSNIGIVSQEPVLFACSIKDNIKYGDNTQEIPMERIIAAAKKAQVHDFVMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEAT 1246          

HSP 2 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 55/136 (40.44%), Postives = 71/136 (52.21%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILD 406
            TALVG SGAGKST +QL+ RFY PT G +TV   D+R+    +W R  + IV QEPVLF  ++ E I YG   E+ +                   LPQ +DT                +AIARAL++N  IL+LD
Sbjct:  451 TALVGPSGAGKSTALQLIHRFYGPTEGMVTVESHDIRS-SHIQWLRNQIGIVEQEPVLFFHTIAEKIRYG--REDATMEDLIQAAKEANAYNFIMDLPQQFDTLVGEGGGQMSGGQKQRVAIARALIRNPKILLLD 583          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCBB_MOUSE (Bile salt export pump OS=Mus musculus GN=Abcb11 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILD 406
            TA VGSSGAGKST +QL+ RFY+P  G +T+ G D+R+ +   W R  + IV QEPVLFS ++ ENI  G   E  +                  +LPQ +DT                +AIARAL++   IL+LD
Sbjct:  451 TAFVGSSGAGKSTALQLIQRFYDPCEGMVTLDGHDIRSLN-IRWLRDQIGIVEQEPVLFSTTIAENIRLG--REEATMEDIVQAAKDANAYNFIMALPQQFDTLVGEGGGQMSGGQKQRVAIARALIRKPKILLLD 583          

HSP 2 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 50/137 (36.50%), Postives = 70/137 (51.09%), Query Frame = 2
Query:    5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415
            A VGSSG GKST +QLL RFY+P  G + + G D +  +       + IV+QEPVLF  S+ +NI YG   + +S                  SLP+ Y+T                IAIARA++++  IL+LDE +
Sbjct: 1110 AFVGSSGCGKSTSIQLLERFYDPDQGTVMIDGHDSKKVNVQFLRSNIGIVSQEPVLFDCSIMDNIKYGDNTKEISVERAIAAAKQAQLHDFVMSLPEKYETNVGIQGSQLSRGEKQRIAIARAIVRDPKILLLDEAT 1246          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 2
Query:    5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415
            A+VG SG+GKST++ L+ RFY+P+ G + + G D+++ +     + +++V QEP LFS S+ ENI YG  +EN S                   + +GY T                +AIARA+LK+  +L+LDE +
Sbjct: 1038 AVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHENIKYG--NENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEAT 1172          

HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 52/143 (36.36%), Postives = 73/143 (51.05%), Query Frame = 2
Query:    5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430
            A VG SG+GKSTI+ ++ RFYEP  G I + G D++   K +W R  + +V+QEP LF+ ++  NI  G   E  +                  SLP GY+T                IAIARA+L+N  IL+LDE + +  A
Sbjct:  404 AFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNL-KLKWLREQMGLVSQEPALFATTIASNILLG--KEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 543          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: TAP2_RAT (Antigen peptide transporter 2 OS=Rattus norvegicus GN=Tap2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 55/143 (38.46%), Postives = 73/143 (51.05%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430
            TALVG +G+GKST+  LL   Y+PTGG++ + GE L  +D     R V +V QEPVLFS SV +NIAYGL D                       +  G +T                +AIARAL++N  +LILDE + +  A
Sbjct:  499 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGEPLVQYDHHYLHRQVVLVGQEPVLFSGSVKDNIAYGLRD--CEDAQVMAAAQAACADDFIGEMTNGINTEIGEKGSQLAVGQKQRLAIARALVRNPRVLILDEATSALDA 639          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430
            TALVG SG GKST++ ++ RFY+P  G IT  G D++  D   +  ++  V+QEPVLF+ S+ +NI +G  +++ +                      GYDT                +AIARA+++N  IL+LDE + +  A
Sbjct:  697 TALVGPSGGGKSTVIAMIERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLFAGSIKDNITFG--NDSATMDQIISAAEKANAHSFIEEFENGYDTIVGERGVRLSGGQKQRVAIARAMIQNPMILLLDEATSALDA 837          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 54/142 (38.03%), Postives = 70/142 (49.30%), Query Frame = 2
Query:    5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430
            ALVG SG GK+TI  L+ RFY+P  G+I + G  L         + +SIV+QEP+LF+ SV ENIAYG  D   S                  + P  Y+T                IAIARALL N  +L+LDE + +  A
Sbjct:  428 ALVGPSGGGKTTIANLIERFYDPLKGKILLNGVSLMEISHQYLHKQISIVSQEPILFNCSVEENIAYGF-DGEASFTDIENAAKMANAHEFIEAFPDKYNTVVGERGLRLSGGQKQRIAIARALLTNPSVLLLDEATSALDA 568          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: Y019_MYCPN (Putative ABC transporter ATP-binding protein MG015 homolog OS=Mycoplasma pneumoniae GN=MPN_019 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFS 421
            A+VG +GAGKSTI+ LL +FY+P  G+I +   ++    ++ W   +SIV Q+P LFS ++ ENI  G  D   +                   LPQGY+T                + IARA+++NAP+L+LDE + S
Sbjct:  427 AIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEISEVSETAWREKISIVLQDPFLFSGTIKENIRMGRQD--ATDEEIIEACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSS 563          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: TAP1_RAT (Antigen peptide transporter 1 OS=Rattus norvegicus GN=Tap1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 52/143 (36.36%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430
            TALVG +G+GKST+  LL   Y+PTGG++ + GE L  +D       V+ V QEP+LF  S  ENIAYGL     +                    PQGYDT                +A+ARAL++   +LILD+ + +  A
Sbjct:  511 TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDDATSALDA 652          
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFA (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 2
Query:    2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415
            TA+VG SG+GKS++++L+ RFYEP  G+I + G  L+ +  ++  R +++V Q+ +LF  S+ ENIAYG   + VS                   LP+G                   +AIARA+LK+APILILDE +
Sbjct:  376 TAIVGRSGSGKSSLIKLIPRFYEPESGQILLDGHPLQDYLLADLRRQIALVGQQVMLFDGSIAENIAYGEMRQVVS-EEIERVVVDANAQDFVNQLPEGLQFQVGVKGGRLSGGQRQRLAIARAMLKDAPILILDEAT 512          
The following BLAST results are available for this feature:
BLAST of FC871604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 304
Match NameE-valueIdentityDescription
ATM1_KLULA4.025e-1733.77Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCBB_RABIT5.257e-1736.50Bile salt export pump OS=Oryctolagus cuniculus GN=... [more]
ABCBB_MOUSE5.257e-1739.71Bile salt export pump OS=Mus musculus GN=Abcb11 PE... [more]
AB14B_ARATH5.257e-1734.31ABC transporter B family member 14 OS=Arabidopsis ... [more]
TAP2_RAT6.866e-1738.46Antigen peptide transporter 2 OS=Rattus norvegicus... [more]
ABCB1_DICDI8.967e-1733.57ABC transporter B family member 1 OS=Dictyostelium... [more]
AB27B_ARATH8.967e-1738.03ABC transporter B family member 27 OS=Arabidopsis ... [more]
Y019_MYCPN1.171e-1635.25Putative ABC transporter ATP-binding protein MG015... [more]
TAP1_RAT1.530e-1636.36Antigen peptide transporter 1 OS=Rattus norvegicus... [more]
MSBA_XYLFA1.530e-1636.96Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3AB09FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3AB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871604 ID=FC871604; Name=FC871604; organism=Citrus sinensis; type=EST; length=754bp
GACTGCTCTAGTGGGCTCAAGTGGAGCTGGCAAAAGTACTATAGTACAGC
TATTGGCTCGTTTCTATGAGCCAACAGGAGGTCGTATAACAGTTGGCGGA
GAGGATCTCCGAACGTTTGACAAGAGTGAATGGGCACGTGTCGTCTCCAT
AGTAAATCAAGAACCTGTCCTTTTTTCGGTGTCTGTTGGAGAAAATATTG
CATATGGGCTTCCAGATGAAAATGTATCAAAGGATGACATCATAAAGGCA
GCCAAAGCTGCAAATGCTCATGATTTTATAATTTCTCTTCCACAGGGTTA
TGACACTCTAGTTGGTGAGCGTGGAGGTCTACTGAGTGGAGGACAGAGGC
AGAGAATAGCAATTGCCAGAGCTTTGCTCAAAAATGCCCCAATTTTGATT
CTCGATGAGGTAAGTTTTAGTTCACAAGCTTGGTTCCCGTTCAGCCTGAT
TGAACACGTGAAGTTGCAAATGTTTAAAGGCTTAGTCATTTGTTTTCATG
AAGGCTTTCTTGATTGTAGTGTGAGATTTTTTTGATCTATTTTTTTGGAT
TGTGATAAGGTGCTTGCAGTCACGCACTTATTGTGCGCGAGGGTGGGGCC
TGTCAAGCTCCCATTGGGGCCTGTGGAGCCTAATGGGAGCTTGACATGTG
CACAGTCGGACTCTATAAGGTGCACGACTTAACGCATGTGATCAGCGCCC
ATATTTTGTTTTAAGTCTGCCCTAAATGTTTCTAATTGTAACATGATGTT
CTCT
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