FC871588

Overview
NameFC871588
Unique NameFC871588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  194 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 412          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  193 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 6.254e-113
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QV LISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  188 LNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 8.168e-113
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QV LISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  197 LNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 8.168e-113
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QV LISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  188 LNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 8.168e-113
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QV LISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  196 LNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 414          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 5.294e-112
Identity = 197/219 (89.95%), Postives = 209/219 (95.43%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QV LISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+G KGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  197 LNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.033e-107
Identity = 187/218 (85.78%), Postives = 206/218 (94.50%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 656
            L++GFKDQIYD+YRYLPP  QVV++SATLPH++LEMTTKFMTDPV+ILVKRDELTLEGIKQFFVAVE+E+WKFDTLCDLYDTLTITQAVIFCNT+RKVDWLTEKMR  NFTVSSMHG+M QKERDAIM EFR G +RVLITTDVWARG+DVQQVSLVINYDLP +RE Y+HRIGRSGRFGRKGVAINFV  DD++ILRDIEQYYSTQIDEMPMNVA+L
Sbjct:  178 LNKGFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIEQYYSTQIDEMPMNVAEL 395          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.142e-106
Identity = 182/219 (83.11%), Postives = 208/219 (94.98%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L+RGF++QIYDVYRYLPP  QVV++SATLP+++L+MTTKFMTDPV++LVKRDELTLEGIKQ+F+AVE+EEWKFDTLCDLYDTLTITQAVIFCNT+RKVDWLT+KMR  NFTVSSMHG+MPQKERD+IM +FR G +RVLI+TDVWARG+DVQQVSLVINYDLP NRE YIHRIGRSGRFGRKGVAINFV +DD++ILRDIE YYSTQIDEMPMNVADL+
Sbjct:  180 LNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.142e-106
Identity = 182/219 (83.11%), Postives = 208/219 (94.98%), Query Frame = 3
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L+RGF++QIYDVYRYLPP  QVV++SATLP+++L+MTTKFMTDPV++LVKRDELTLEGIKQ+F+AVE+EEWKFDTLCDLYDTLTITQAVIFCNT+RKVDWLT+KMR  NFTVSSMHG+MPQKERD+IM +FR G +RVLI+TDVWARG+DVQQVSLVINYDLP NRE YIHRIGRSGRFGRKGVAINFV +DD++ILRDIE YYSTQIDEMPMNVADL+
Sbjct:  180 LNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
The following BLAST results are available for this feature:
BLAST of FC871588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_CHICK2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
IF4A3_DANRE6.254e-11390.41Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
IF4A3_XENTR8.168e-11390.41Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_SALSA8.168e-11390.41Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
I4A3B_XENLA8.168e-11390.41Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
I4A3A_XENLA5.294e-11289.95Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
FAL1_CRYNE1.033e-10785.78ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
FAL1_NEOFI1.142e-10683.11ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI1.142e-10683.11ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BE01FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871588 ID=FC871588; Name=FC871588; organism=Citrus sinensis; type=EST; length=857bp
TGCTGAGCAGAGGGTTCAAGGATCAAATTTATGATGTGTACCGTTATCTT
CCACCGGATCTTCAGGTTGTTTTGATATCTGCCACCCTTCCTCACGAAAT
ATTGGAGATGACGACCAAATTCATGACAGATCCTGTAAAGATTCTTGTGA
AGCGTGATGAGTTGACTTTGGAGGGAATCAAGCAATTTTTTGTTGCAGTG
GAAAGAGAGGAGTGGAAGTTTGATACACTCTGTGATCTTTATGATACCCT
TACGATTACACAAGCTGTTATTTTCTGCAACACGAAGCGTAAGGTGGATT
GGCTAACAGAGAAGATGCGCGGCTATAACTTTACTGTCTCATCAATGCAT
GGAGACATGCCTCAGAAGGAAAGAGATGCAATTATGGGAGAATTTCGGTC
TGGGACAACCCGTGTGCTCATCACAACTGATGTTTGGGCACGAGGACTTG
ATGTTCAGCAGGTTTCTTTGGTGATAAATTATGACCTTCCTAACAATCGT
GAGCTTTATATTCACCGGATTGGTCGTTCTGGACGTTTTGGACGCAAGGG
TGTAGCAATAAATTTTGTCAAAAACGATGATATCAAGATTCTTAGAGATA
TCGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAATGTTGCT
GATCTGATATAAGAGATGTTTGTGATCTCGTCTGCCAGAGTGGAGGTTAT
GGGATTGATCAATGAAAGGTTGAAGACAATTGTGTGATTGACAGTTTCTG
CAAGTGTGACATTGTCTTTGTTTTTGTGAGGAGTTTGTATAATACAGGAT
GTTCTCATATTTTCTGTATGGTATTGATGACAAAAAAAAGAAGAGAGTAG
GCATTAA
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