FC871524

Overview
NameFC871524
Unique NameFC871524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.479e-12
Identity = 56/196 (28.57%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREAKVE--RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG-GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DKSI +W+L   +      QR L      + D+ ++SDG+  ++   +  L L D  A V   R++   + + S + S DN+ ++    ++ I LWN  GE K      G     +V    F     Q  I S S D  V +W+ ++C L   L GH+G V+ V+ +P +  + AS   D  + +W L +
Sbjct:   31 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE 225          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 56/220 (25.45%), Postives = 100/220 (45.45%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 658
            W   +G C H +      +V   ++P    + +G+ D +  +W++  G+E+    G    +I  L   + G +IIT   +  +++ D     KV   I     I+S   S D   +L   +++   LW+     K VA   GH     ++ SCF    +  IA+ S D    +++  +   I  L GH G ++ +S+NP    +L + S D+T RIW ++
Sbjct:  162 WSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLA-EIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSG-KCVATLTGHDDE--ILDSCFDYTGK-LIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLL-TGSSDKTARIWDVQ 375          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: SNR40_DICDI (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 60/226 (26.55%), Postives = 110/226 (48.67%), Query Frame = 2
Query:    8 WDVSSGNCL-HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD---REAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKRS--RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 658
            WD + G  +  + E +G+    C        + SG++D+S  +++   K       Q    ++ +  +    Q+IT   ++ + + D   +E  +        TITS S+S+D  +LL N ++    +W+I       + +  + G + +  + +I+S +  ++   I  GS D QVYIW   +  L   LPGHSG VN V+++P  P ++AS S D+TI +  +K
Sbjct:  132 WDSNKGELIKRIREHSGVVNSCCPARRGPPLVASGSDDRSARIFDTRSKG-STHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQEDPLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNLIKSSWS-IDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEP-IIASCSSDKTIYLGEIK 354          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 56/196 (28.57%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREAKVE--RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG-GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DKSI +W+L   +      QR L      + D+ ++SDG+  ++   +  L L D  A V   R++   + + S + S DN+ ++    ++ I LWN  GE K      G     +V    F     Q  I S S D  V +W+ ++C L   L GH+G V+ V+ +P +  + AS   D  + +W L +
Sbjct:   31 IVSASRDKSIIVWKLTKDDKSYGVRQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE 225          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.303e-12
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV--IRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I + + DKSI +W L     +    +R L      + D+ ++SDG   ++   +  L L D +A     R++   + + S + S DN+ ++    ++ I LWN  GE K + +  G   S +V  +R     L Q  I SGS D  V IW+  +C L   L GH+G VN  + +P +  + AS   D  I +W L +
Sbjct:   32 IVTSSRDKSIIVWSLTKDGPQYGVPRRRLTGHGHFVQDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSADNRQIVSASRDKSIRLWNTLGECKYIIQ-DGDSHSDWVSCVRFSPNNL-QPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSP-DGSLCASGGKDGVILLWDLAE 225          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.303e-12
Identity = 57/196 (29.08%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG-GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I + + DKSI +W L  ++      +R L      + D+ ++SDG+  ++   +  L L D  A     R++   + + S + S DN+ ++    ++ I LWN  GE K   +  G   S +V    F     Q  I S S D  V +W+  +C L   L GHSG VN V+ +P +  + AS   D  I +W L +
Sbjct:   31 IVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-DGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE 224          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 53/216 (24.54%), Postives = 96/216 (44.44%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 649
            WD +SG      E  G  + S  + PDR+ + SG++DK+I +W+               ++  +  + DG+++ +   +  + + D  +    +       ++ S + S D + +     ++ I +W+           +GH  S + +     G     +ASGS+D  + IW  AS      L GH G V  V ++P +   +AS SDD TI+IW
Sbjct:  868 WDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGT-CTQTLEGHGGSVWSVAFSPDGQR---VASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSP-DGQRVASGSDDHTIKIW 1078          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.135e-11
Identity = 53/219 (24.20%), Postives = 110/219 (50.23%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKW---IFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHLWNIEG---EVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDR 634
            WD  +G  +   +     + SC  +P R+    + +G++D ++ +W++  K+      Q T ++  +       QII+   ++ + + D       Y       ++T  SLS +  +LL N ++  + +W++     + + V  ++G  H   + ++R C    + + IA+GS D  VY+W   S  ++  LPGH+G++N V+++P  P +L+++SD R
Sbjct:  137 WDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIR-KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLR-CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 351          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.789e-11
Identity = 57/230 (24.78%), Postives = 104/230 (45.22%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE---------LGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE---VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH--MLASASDDRTIRIW 649
            WD+ +    H +    L + S  +  D ++I SG+ DK   +W+         LG +E+    G     ++ + ++ DG+ +     ++ + L D +    +ERY     ++ S + S D K L    L++ + LW++ G     +  A + GHK   FV+   F   + +++ SGS+D  V  W   +      L GH  +V  V+ +P N    + A+ S D   R+W
Sbjct:  354 WDIHTKKIQHTFYGHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNG-----VTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKD--FVLSVAFSP-DGSWLISGSKDRSVQFWDPRNGTTHMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLW 575          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.789e-11
Identity = 53/219 (24.20%), Postives = 110/219 (50.23%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKW---IFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHLWNIEG---EVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDR 634
            WD  +G  +   +     + SC  +P R+    + +G++D ++ +W++  K+      Q T ++  +       QII+   ++ + + D       Y       ++T  SLS +  +LL N ++  + +W++     + + V  ++G  H   + ++R C    + + IA+GS D  VY+W   S  ++  LPGH+G++N V+++P  P +L+++SD R
Sbjct:  137 WDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIR-KKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR-CSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSDKR 351          
The following BLAST results are available for this feature:
BLAST of FC871524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GBLP_ARATH1.479e-1228.57Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_RAT1.931e-1225.45WD repeat-containing protein 69 OS=Rattus norvegic... [more]
SNR40_DICDI2.523e-1226.55U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
GBLP_BRANA3.295e-1228.57Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL4.303e-1229.44Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_MEDSA4.303e-1229.08Guanine nucleotide-binding protein subunit beta-li... [more]
HETE1_PODAN1.252e-1124.54Vegetative incompatibility protein HET-E-1 OS=Podo... [more]
SNR40_BOVIN2.135e-1124.20U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
TUP1_DICDI2.789e-1124.78General transcriptional corepressor tupA OS=Dictyo... [more]
SNR40_MOUSE2.789e-1124.20U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AH05FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871524 ID=FC871524; Name=FC871524; organism=Citrus sinensis; type=EST; length=954bp
TAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGTTTATGAAAAAG
CTGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACAGAAAATGGATA
TTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAACTAGGTGGAAA
AGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGATTTCTGATTTGG
AAGTAACAAGTGATGGGAAGCAGATTATAACTATGTGTAAAGAATCTGCC
CTACTATTATTGGACAGAGAAGCAAAAGTTGAGAGGTACATTGAAGAGGA
TCAAACAATAACATCATTCTCATTATCTAGAGACAACAAATTCTTGCTGG
TGAATCTTCTGAACCAAGAAATCCATCTTTGGAACATAGAGGGTGAAGTC
AAGCTGGTTGCCAAGTACAAAGGTCATAAACGTAGTCGTTTTGTTATTAG
GTCTTGTTTTGGTGGGCTTGAGCAAGCTTTTATTGCCAGTGGGAGTGAGG
ATTCACAGGTTTATATATGGCATAGAGCCTCATGTGACCTCATTGGGGCA
TTACCAGGTCATTCTGGAGCTGTTAACTGTGTGAGCTGGAATCCAGCAAA
TCCTCACATGTTGGCATCAGCCAGTGATGACCGTACTATTCGGATATGGG
GCTTGAAAGATCTAAATGTGAAGCGGAAGGATTGTCACAGCAATGGCGTC
CACTATTGCAATGGAGGAACTTGAAACCAAAAGAGTAGAATCTTCATCGC
TTAATTCCTTGACCATTGCTTTTCTGTAAATACTTCATTTTCATTTCAAG
CCGACATTCATATCAAACAAGTTTGTGAACGGAAGCATCCTTCTCATAAT
AAATCTGCGCCTTCTCATTTAATTCAAATAATTAATTAATTATGATAAAA
AGGGTTTTAAAGACAAATTTGAAACTTGACTGGTGCAGCTTAAAAAACAT
GGGG
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