FC871524
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 52/219 (23.74%), Postives = 110/219 (50.23%), Query Frame = 2 Query: 8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKW---IFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHLWNIEG---EVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDR 634 WD +G + + + SC +P R+ + +G++D ++ +W++ K+ Q T ++ + QII+ ++ + + D Y ++T SLS + +LL N ++ + +W++ + + V ++G H + ++R C + + IA+GS D VY+W S ++ LPGH+G++N V+++P P +++++SD R Sbjct: 136 WDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIR-KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR-CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKR 350
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 47/191 (24.61%), Postives = 91/191 (47.64%), Query Frame = 2 Query: 104 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 670 +G D + +W + T + ++ S ++++ +L L D EA + + +I+S ++L ++ I LW++ + V +YKGH ++ +R + ++AS S+DS V +W + +I H+ AVN V ++P N ++LAS S DRT+++W L+ N+ Sbjct: 38 TGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRK-GCVFRYKGHTQA---VRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHP-NEYLLASGSADRTVKLWDLEKFNM 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 48/191 (25.13%), Postives = 90/191 (47.12%), Query Frame = 2 Query: 104 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 670 +G +D + +W + T I L++++ + I+ + ++ + D EA + + I S F+ L+ +I LW++ + + KYK H ++ +R G ++AS ++D V +W + ++ GHSG VN V ++P+ ++LAS S DRTIR W L+ +V Sbjct: 38 TGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRK-GCIFKYKSHTQAVRCLRFSPDG---KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWDLEKFHV 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_MOUSE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_MACFA (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_HUMAN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_CHICK (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_BOVIN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11 Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661 I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ + L L D R++ + + S + S DN+ ++ ++ I LWN G K + + H +R ++ G D V +W+ A+C L GH+G +N V+ +P + + AS D +W L + Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223 The following BLAST results are available for this feature:
BLAST of FC871524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871524 ID=FC871524; Name=FC871524; organism=Citrus sinensis; type=EST; length=954bpback to top |