FC871524

Overview
NameFC871524
Unique NameFC871524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 52/219 (23.74%), Postives = 110/219 (50.23%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKW---IFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHLWNIEG---EVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDR 634
            WD  +G  +   +     + SC  +P R+    + +G++D ++ +W++  K+      Q T ++  +       QII+   ++ + + D       Y       ++T  SLS +  +LL N ++  + +W++     + + V  ++G  H   + ++R C    + + IA+GS D  VY+W   S  ++  LPGH+G++N V+++P  P +++++SD R
Sbjct:  136 WDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIR-KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR-CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKR 350          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 47/191 (24.61%), Postives = 91/191 (47.64%), Query Frame = 2
Query:  104 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 670
            +G  D  + +W +            T  +  ++  S  ++++      +L L D EA   +   +    +I+S       ++L    ++  I LW++  +   V +YKGH ++   +R      +  ++AS S+DS V +W   +  +I     H+ AVN V ++P N ++LAS S DRT+++W L+  N+
Sbjct:   38 TGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRK-GCVFRYKGHTQA---VRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHP-NEYLLASGSADRTVKLWDLEKFNM 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 48/191 (25.13%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  104 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 670
            +G +D  + +W +            T  I  L++++  + I+   +  ++ + D EA   +   +     I S        F+    L+ +I LW++  +   + KYK H ++   +R    G    ++AS ++D  V +W   +  ++    GHSG VN V ++P+  ++LAS S DRTIR W L+  +V
Sbjct:   38 TGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRK-GCIFKYKSHTQAVRCLRFSPDG---KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWDLEKFHV 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_MOUSE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_MACFA (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_HUMAN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_CHICK (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_BOVIN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 51/195 (26.15%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   + + H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
The following BLAST results are available for this feature:
BLAST of FC871524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
SNR40_HUMAN3.643e-1123.74U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_DANRE3.643e-1124.61Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
KTNB1_CHICK3.643e-1125.13Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
GBLP_RAT3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MOUSE3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MACFA3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HUMAN3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_CHICK3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_BOVIN3.643e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AH05FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871524 ID=FC871524; Name=FC871524; organism=Citrus sinensis; type=EST; length=954bp
TAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGTTTATGAAAAAG
CTGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACAGAAAATGGATA
TTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAACTAGGTGGAAA
AGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGATTTCTGATTTGG
AAGTAACAAGTGATGGGAAGCAGATTATAACTATGTGTAAAGAATCTGCC
CTACTATTATTGGACAGAGAAGCAAAAGTTGAGAGGTACATTGAAGAGGA
TCAAACAATAACATCATTCTCATTATCTAGAGACAACAAATTCTTGCTGG
TGAATCTTCTGAACCAAGAAATCCATCTTTGGAACATAGAGGGTGAAGTC
AAGCTGGTTGCCAAGTACAAAGGTCATAAACGTAGTCGTTTTGTTATTAG
GTCTTGTTTTGGTGGGCTTGAGCAAGCTTTTATTGCCAGTGGGAGTGAGG
ATTCACAGGTTTATATATGGCATAGAGCCTCATGTGACCTCATTGGGGCA
TTACCAGGTCATTCTGGAGCTGTTAACTGTGTGAGCTGGAATCCAGCAAA
TCCTCACATGTTGGCATCAGCCAGTGATGACCGTACTATTCGGATATGGG
GCTTGAAAGATCTAAATGTGAAGCGGAAGGATTGTCACAGCAATGGCGTC
CACTATTGCAATGGAGGAACTTGAAACCAAAAGAGTAGAATCTTCATCGC
TTAATTCCTTGACCATTGCTTTTCTGTAAATACTTCATTTTCATTTCAAG
CCGACATTCATATCAAACAAGTTTGTGAACGGAAGCATCCTTCTCATAAT
AAATCTGCGCCTTCTCATTTAATTCAAATAATTAATTAATTATGATAAAA
AGGGTTTTAAAGACAAATTTGAAACTTGACTGGTGCAGCTTAAAAAACAT
GGGG
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