FC871524

Overview
NameFC871524
Unique NameFC871524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.757e-11
Identity = 48/199 (24.12%), Postives = 98/199 (49.25%), Query Frame = 2
Query:   71 CGWHPDRKWIFSGANDKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD-DRTIRIW 649
            C ++P    + SG+ D+S+ +W++  K   C K     +  +S +    DG  I +   +  + + D      ++  ++++    +F   S + K++L + L+  + LW+   + K + +Y GH+ S++ I + F      +I SGSED ++YIW+  + +++  L GH+  V     +P    + + A + D  I IW
Sbjct:  177 CNFNPQSSLVVSGSFDESVRIWDV--KTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFS-KGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREIVQCLEGHTQPVLASDCHPVQNIIASGALEPDNKIHIW 372          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.757e-11
Identity = 55/196 (28.06%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG-GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I + + D+SI +W L  ++      +R L      + D+ ++SDG+  ++   +  L L D  A     R++   + + S + S DN+ ++    ++ I LWN  GE K   +  G   S +V    F     Q  I S S D  V +W+  +C L   L GH+G VN V+ +P +  + AS   D  I +W L +
Sbjct:   31 IVTASRDRSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-DGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE 224          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 50/207 (24.15%), Postives = 92/207 (44.44%), Query Frame = 2
Query:   68 SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG------------ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 649
            S  + PD K++ +G  D+ I +W++  K +         +I  L+ + DGK +++   +  + L D EA  ++ I   D  +T+   S D +F+    L++ I +W   G   LV +  GH+ S + +     G    ++ SGS D+ + +W       +                GH   +  V+ +P +   + S S DRTI+ W
Sbjct:  339 SVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSG--TLVEQLHGHEESVYSVAFSPDG---KYLVSGSLDNTIKLWELQCVSNVAPSMYKEGGICKQTFTGHKDFILSVTVSP-DGKWIISGSKDRTIQFW 539          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 47/191 (24.61%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  104 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 670
            +G +D  + +W +            T  +  + + +  + I+   +  ++ + D EA   +   +     I S       +F+     +  I LW+I  +   V +Y+GH ++   +R    G    ++AS ++D  V +W   +  ++   PGH+G VN V ++P N ++LAS S DRTIR W L+   V
Sbjct:   38 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRK-GCVFRYRGHSQAVRCLRFSPDG---KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWDLEKFQV 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 47/191 (24.61%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  104 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 670
            +G +D  + +W +            T  +  + + +  + I+   +  ++ + D EA   +   +     I S       +F+     +  I LW+I  +   V +Y+GH ++   +R    G    ++AS ++D  V +W   +  ++   PGH+G VN V ++P N ++LAS S DRTIR W L+   V
Sbjct:   38 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRK-GCVFRYRGHSQAVRCLRFSPDG---KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWDLEKFQV 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 51/195 (26.15%), Postives = 88/195 (45.13%), Query Frame = 2
Query:   98 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            I S + DK+I MW+L   E      QR L+     +SD+ ++SDG+  ++   +  L L D        R++   + + S + S DN+ ++    ++ I LWN  G  K   +   H      +R          ++ G  D  V +W+ A+C L     GH+G +N V+ +P +  + AS   D    +W L +
Sbjct:   31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLGVCKYTIQDDSHTEWVSCVRFSPNSSNPIIVSCGW-DKMVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 223          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: DCAF8_PONAB (DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.115e-11
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  293 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIW-----------GLKDLNVKRK 679
            E    IT    S D   LL +  +++I+L+N       + V +YKGH+ +  V    F G +  F+ SGS+   +++W ++SC +I  + G   G VNC+  +P  P +LA++  D  ++IW           GLKD+  K K
Sbjct:  385 ESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLP-VLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNK 526          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: DCAF8_HUMAN (DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.115e-11
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  293 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIW-----------GLKDLNVKRK 679
            E    IT    S D   LL +  +++I+L+N       + V +YKGH+ +  V    F G +  F+ SGS+   +++W ++SC +I  + G   G VNC+  +P  P +LA++  D  ++IW           GLKD+  K K
Sbjct:  385 ESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLP-VLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNK 526          
The following BLAST results are available for this feature:
BLAST of FC871524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TG125_CAEEL4.757e-1124.12WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
GBLP_SOYBN4.757e-1128.06Guanine nucleotide-binding protein subunit beta-li... [more]
TUP12_SCHPO6.213e-1124.15Transcriptional repressor tup12 OS=Schizosaccharom... [more]
KTNB1_MOUSE6.213e-1124.61Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN6.213e-1124.61Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
GBLP_DANRE6.213e-1126.15Guanine nucleotide-binding protein subunit beta-2-... [more]
DCAF8_PONAB8.115e-1130.77DDB1- and CUL4-associated factor 8 OS=Pongo abelii... [more]
DCAF8_HUMAN8.115e-1130.77DDB1- and CUL4-associated factor 8 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AH05FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871524 ID=FC871524; Name=FC871524; organism=Citrus sinensis; type=EST; length=954bp
TAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGTTTATGAAAAAG
CTGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACAGAAAATGGATA
TTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAACTAGGTGGAAA
AGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGATTTCTGATTTGG
AAGTAACAAGTGATGGGAAGCAGATTATAACTATGTGTAAAGAATCTGCC
CTACTATTATTGGACAGAGAAGCAAAAGTTGAGAGGTACATTGAAGAGGA
TCAAACAATAACATCATTCTCATTATCTAGAGACAACAAATTCTTGCTGG
TGAATCTTCTGAACCAAGAAATCCATCTTTGGAACATAGAGGGTGAAGTC
AAGCTGGTTGCCAAGTACAAAGGTCATAAACGTAGTCGTTTTGTTATTAG
GTCTTGTTTTGGTGGGCTTGAGCAAGCTTTTATTGCCAGTGGGAGTGAGG
ATTCACAGGTTTATATATGGCATAGAGCCTCATGTGACCTCATTGGGGCA
TTACCAGGTCATTCTGGAGCTGTTAACTGTGTGAGCTGGAATCCAGCAAA
TCCTCACATGTTGGCATCAGCCAGTGATGACCGTACTATTCGGATATGGG
GCTTGAAAGATCTAAATGTGAAGCGGAAGGATTGTCACAGCAATGGCGTC
CACTATTGCAATGGAGGAACTTGAAACCAAAAGAGTAGAATCTTCATCGC
TTAATTCCTTGACCATTGCTTTTCTGTAAATACTTCATTTTCATTTCAAG
CCGACATTCATATCAAACAAGTTTGTGAACGGAAGCATCCTTCTCATAAT
AAATCTGCGCCTTCTCATTTAATTCAAATAATTAATTAATTATGATAAAA
AGGGTTTTAAAGACAAATTTGAAACTTGACTGGTGCAGCTTAAAAAACAT
GGGG
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