FC871435

Overview
NameFC871435
Unique NameFC871435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.433e-16
Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = 2
Query:    5 GVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 532
            GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS       ++KYK  ++K+E +Q   +A+   +  D  SG    + VIT+   E++
Sbjct:   27 GVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHV 204          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 49/160 (30.63%), Postives = 83/160 (51.88%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 484
            GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H      + +V +A TL+K   + Y+  + A L++ G D            G     PFA  GSGS       +++Y+ G+TK+E  + VV+ +   +  D  SG
Sbjct:   29 GVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSG 188          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 58/182 (31.87%), Postives = 91/182 (50.00%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT-KGHKEYLRNHL 544
            DGV+L AD RA+ G IV  KN  KIH +  ++   GAG   D   +  ++ ++ +L+   +G+   V    TLL   L   +     A  L G     P L+++   G      +   GSG   A ++ +S+Y+E L   EGI++ V+AI S I  D+ SG  + V  IT +G++E   + L
Sbjct:   20 DGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRELSNSRL 201          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 53/174 (30.46%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            D VIL  D RA+ G +V DK  +K++ +   I    AG+  D +A+  ++ ++ +L++  TGR    +   TLL   L + + +     +++GG D   G  L ++ P  G  +   F   GSGS  A  + E+ Y   ++ +EGI+L ++A+ S +  D  SG+ + + VITK
Sbjct:   16 DAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITK 189          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 50/173 (28.90%), Postives = 86/173 (49.71%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            DGV++  + RAT G  +  K  +KI+ +A  +    AG+  D + +  ++  +  L+     R+  V    TL    L +Y+ +     L++GG+D  G  +++I P  G+ +       GSGSL A  + E ++   +  DE ++L V AI S +  D  SG  +DV  IT+
Sbjct:   21 DGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITE 193          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 56/185 (30.27%), Postives = 91/185 (49.19%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT--GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG---HKEYLRNHL 544
            GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +AV DM + QL+LH         V+ A  +++   + Y+  + A L++ G D    G    T+   G     PFA  GSGS       ++ YK G++ +E  +   DAI   +  D  SG  + +  IT     H+  L N L
Sbjct:   31 GVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNEL 213          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            D VI+  + R T    +  KN +K+  +        AG   D + +   + ++L+L+R    R +  + A+  L  ++ N   Y+     L++GG+D T PH+ +I   G +    +A+ GSGS     + ES+Y E +T DEG+ LV+ AI +    D  SG  +DV VIT+
Sbjct:   18 DAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITR 188          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D   G  ++     G     PFA  GSGS       ++ YK G+T +E  +   DAI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +  +IYC  +G+AAD +A+ DM + QL+LH         V+ A  +++   + Y+  + A L++ G D            G     PFA  GSGS       ++ YK G++ +E  +   +AI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGGVIYLATIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 49/174 (28.16%), Postives = 86/174 (49.43%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY---VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            DGV+   + RA+ G ++  K  +KI  +  +I    AG+ AD +++   + ++  L+R     +  +  A  L    L + + Y   VQ   +LGGVD  G  ++++ P G      F + GSGS  A  + E +Y + L  DE + + + AI S +  D  SG+ + V  +T+
Sbjct:   19 DGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQT--LLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTE 190          
The following BLAST results are available for this feature:
BLAST of FC871435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PB6LA_SALSA1.433e-1631.46Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB9_ORYLA7.110e-1630.63Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSMB_PYRAB1.584e-1531.87Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_METJA1.584e-1530.46Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_ARCFU1.584e-1528.90Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB9_HUMAN4.608e-1530.27Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]
PSMB_THEAC7.861e-1530.64Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSB9_RAT1.751e-1430.59Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_BOVIN8.691e-1428.40Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSMB_METTH1.482e-1328.16Proteasome subunit beta OS=Methanobacterium thermo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AB10FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871435 ID=FC871435; Name=FC871435; organism=Citrus sinensis; type=EST; length=858bp
GGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAG
TTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATAT
TGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGT
CAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGG
TTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGT
TATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCA
TCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTTGCGA
CAATGGGTTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATAC
AAAGAAGGCCTGACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCAT
TTGCTCTGGTATATTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTCT
GTGTAATTACCAAGGGGCACAAAGAGTACCTGAGGAACCACCTTTTGCCA
AATCCTCGCACCTTTGTCAATGCCAAAGGCTATTCTTTCCCTAAGAAGAC
AGAGGTCCTCTTGACGAAGATCACCCCGCTGAGGGAAAGGGTGGAAGTGG
TTGAGGGAGGAGATGCAATGGAAGAGTGAAAGATCAGAAGAGCACAAGGC
TGAAATCAGAGTATAGTTTACAATTCCTGGTTTAGAAACTGGAATGATAT
TTTTTAAAATTTTACATTTTCCGGAATTGGGTTCGCACATGACTACTTGT
GGATTATGTTATTTAGCTTTGTGTTCAGTTGATGGTTGTGTTGATGGAAT
TCCTTTGC
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