EY679855

Overview
NameEY679855
Unique NameEY679855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679855 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.984e-26
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 3
Query:   12 VATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVKSTASSFSVA 236
            VA AN+LE S        YY+LS+LTRTADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKGA+K+V++TA+SFS+A
Sbjct:  188 VAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266          
BLAST of EY679855 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.741e-25
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 3
Query:   12 VATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVKSTASSFSVA 236
            VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKGA+K+V+S  SSFSVA
Sbjct:  189 VASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267          
BLAST of EY679855 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.616e-25
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 3
Query:   12 VATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVKSTASSFSVA 236
            VATANILE S        YY +SVLTRTADGDEGGKH +I+ATV  GKLYICKAQAGDKRWFKGA+K+V+ST +SF+VA
Sbjct:  186 VATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264          
BLAST of EY679855 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.129e-24
Identity = 58/79 (73.42%), Postives = 62/79 (78.48%), Query Frame = 3
Query:   12 VATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVKSTASSFSVA 236
            V TANILE S        YY + VLTRTADGDEGGKH LITATV  GKLYICKAQAGDKRWFKGA+K+V+S ASSFS A
Sbjct:  187 VRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265          
BLAST of EY679855 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.741e-23
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 3
Query:   12 VATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVKSTASSFSVA 236
            VATAN+LE+S        YY ++VLTRTADGDEGGKHQLITATV  GKLY+CKAQ  DKRWFKGA+K+V++ A SFSVA
Sbjct:  181 VATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258          
BLAST of EY679855 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.997e-13
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   12 VATANILEASVRPP-----YYFLSVLTRTADGDEGGKHQLITATV-KGGKLYICKAQAGDKRWFKGARKYVKSTASSFSV 233
            V+ A++L+ S         YY   +L R+ADGDEGG+HQLI ATV    KLYI K Q GDKRWFKGA+K       SF+V
Sbjct:  165 VSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244          
The following BLAST results are available for this feature:
BLAST of EY679855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP3_TOBAC5.984e-2670.89Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_SPIOL1.741e-2572.15Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG6.616e-2572.15Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.129e-2473.42Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.741e-2369.62Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE1.997e-1351.25Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-G04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679855 ID=EY679855; Name=EY679855; organism=Citrus sinensis; type=EST; length=453bp
CCACGCGTCCGGTGGCAACAGCTAACATCTTGGAGGCTTCAGTCCGACCA
CCATACTACTTCTTGTCTGTATTAACAAGAACTGCTGATGGAGATGAAGG
TGGCAAGCATCAACTAATTACAGCCACGGTTAAAGGTGGCAAGCTTTACA
TCTGCAAGGCACAAGCTGGAGACAAGAGGTGGTTTAAGGGAGCAAGAAAG
TATGTGAAAAGCACTGCCAGTTCTTTCAGTGTTGCTTGAGACATTAATCA
GAATTTTTATGTAAATCCAACTTAATGTATGCTGTTTGTTTTGAATTATC
TACTCCCATCTTTCCCCAAAAGCTTCTGAGTTTCTAATTGAAGGAGTTGG
TTGGAAAAAGCTTGTGGATATTTGAGTATTTAATGGCATATAAGGGCCCT
CTTGTATAGCTGTTACAAATGTTTCCCGTCAAAAAAAAAAAAAAAAAAAA
AAA
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