FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACC3 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain 03BB102) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACC1 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 10987) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACC0 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain AH820) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACAN (Ribosomal RNA small subunit methyltransferase G OS=Bacillus anthracis GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACAH (Ribosomal RNA small subunit methyltransferase G OS=Bacillus thuringiensis (strain Al Hakam) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACAC (Ribosomal RNA small subunit methyltransferase G OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACAA (Ribosomal RNA small subunit methyltransferase G OS=Bacillus anthracis (strain A0248) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACS1 (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rsmG PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   55 GKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            GK    RE+YD+  ARAVA M +L+E CLPL +VGG F+A K     EE+KN+++A++++G  ++   + E      +R  +V  K + TPKKYPR AGTPAK P+
Sbjct:  135 GKRSVHRERYDLVTARAVARMSVLSELCLPLAKVGGRFIALKAQKSDEELKNAQKAIEVLGGKVIADYATELPQVHDERHIIVVAKEKETPKKYPRKAGTPAKSPI 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_EXIS2 (Ribosomal RNA small subunit methyltransferase G OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rsmG PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  GK+  FRE +DV  ARAVA M +LAEYCLPL RVGG FVA K     EE++    A++++G +L +    +      +R  V+  K R TP KYPR AGTPAK PL
Sbjct:  127 RAEEFGKNKQFREHFDVVTARAVARMSVLAEYCLPLARVGGQFVALKAAKLGEELEEGATALKVLGGNLRESFQFQLPGEESERNIVIVDKKRLTPGKYPRKAGTPAKDPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOTH (Ribosomal RNA small subunit methyltransferase G OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rsmG PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG--QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G D  +RE+YD++VARAVA + +L EYCLP V+VGG F+A KG+   EEV+NS++A++++G  +  +  +E   PF   +R  +V  K R+TP KYPR +G P+K PL
Sbjct:  132 RAEEKGVDPDYREKYDISVARAVASLPVLLEYCLPFVKVGGCFIAMKGNS-TEEVENSKKALEILGGKIEDI--LEFNLPFSDIKRNVIVIKKFRQTPTKYPRKSGKPSKNPL 241          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_BACC32.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACC12.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACC02.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACAN2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACAH2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACAC2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACAA2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACS11.412e-2145.28Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_EXIS21.844e-2147.75Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOTH2.408e-2146.02Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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