FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOPE (Ribosomal RNA small subunit methyltransferase G OS=Clostridium perfringens GN=rsmG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +    RE +D+A +RAVA M +L+E+C+P V+V G F+A KG +  EE+ +S+ A+  +G  L  +  VE +        V+  K + TPK +PR AG   K PL
Sbjct:  128 RAEDGARKKELRENFDIATSRAVANMCVLSEFCIPYVKVNGNFIALKGPNITEELNDSKNAIGTLGGKLKGITEVEIEGTDLNHNLVIVDKIKSTPKTFPRKAGNVTKKPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_CLOP1 (Ribosomal RNA small subunit methyltransferase G OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rsmG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +   +    RE +D+A +RAVA M +L+E+C+P V+V G F+A KG +  EE+ +S+ A+  +G  L  +  VE +        V+  K + TPK +PR AG   K PL
Sbjct:  128 RAEDGARKKELRENFDIATSRAVANMCVLSEFCIPYVKVNGNFIALKGPNITEELNDSKNAIGTLGGKLKGITEVEIEGTDLNHNLVIVDKIKSTPKTFPRKAGNVTKKPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACRJ (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus reuteri (strain JCM 1112) GN=rsmG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   40 RGQTLGKDVS-FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T     S +RE++D+  ARAVA + +L+E CLP  +VGG F+A K     EE++    A++ +G  + +  ++       +R  +V  K + TPKKYPR  G P+K P+
Sbjct:  129 RAETFSAKTSPYREKFDIVTARAVARLSVLSELCLPAAKVGGEFIAYKASAAPEELQQGGTAIKQLGGKVQKTVTLTLPGTDEERNIIVIDKIKATPKKYPRRPGLPSKKPI 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACRD (Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus reuteri (strain DSM 20016) GN=rsmG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   40 RGQTLGKDVS-FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T     S +RE++D+  ARAVA + +L+E CLP  +VGG F+A K     EE++    A++ +G  + +  ++       +R  +V  K + TPKKYPR  G P+K P+
Sbjct:  129 RAETFSAKTSPYREKFDIVTARAVARLSVLSELCLPAAKVGGEFIAYKASAAPEELQQGGTAIKQLGGKVQKTVTLTLPGTDEERNIIVIDKIKATPKKYPRRPGLPSKKPI 240          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ANATD (Ribosomal RNA small subunit methyltransferase G OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rsmG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + LG+   FRE++D   ARAV  + +L EY +PL++VGG F+A KG + ++E+  ++ A++++G  +  +          +R+ ++  K R+TP  +PR+     K PL
Sbjct:  128 RAEVLGRKEEFREKFDFVFARAVDRLNVLCEYAIPLLKVGGAFLAQKGFECEDEIDLAKNAIEILGGEIYSIEKFVLPYSDEKRSIIIIKKLRQTPSNFPRNTKQIVKKPL 238          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRMU (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus mutans GN=rsmG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR  +D+  ARAVA +++L+E  +P ++VGG  +A K     EE+K ++ A+ L+ +      S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEVFGQDKNFRAHFDLVTARAVARLQVLSELTIPFLKVGGQLLALKASAADEELKTAQNALNLLFSQTTS--SDNYQLPNGDGRNLTIITKKKETPNKYPRKAGMPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRPM (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M28 GN=rsmG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+DV  ARAVA M++L+E  +P +++GG  +A K     +E++ ++ A+ L+   +++  S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIGGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRPF (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rsmG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+DV  ARAVA M++L+E  +P +++GG  +A K     +E++ ++ A+ L+   +++  S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIGGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRPD (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rsmG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+DV  ARAVA M++L+E  +P +++GG  +A K     +E++ ++ A+ L+   +++  S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIGGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRPC (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rsmG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+DV  ARAVA M++L+E  +P +++GG  +A K     +E++ ++ A+ L+   +++  S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIGGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_CLOPE4.399e-1536.94Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_CLOP14.399e-1536.94Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACRJ1.280e-1435.71Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACRD1.280e-1435.71Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_ANATD1.672e-1432.43Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRMU2.183e-1437.50Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRPM2.851e-1437.50Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRPF2.851e-1437.50Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRPD2.851e-1437.50Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRPC2.851e-1437.50Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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