FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRA3 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus agalactiae serotype III GN=rsmG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D  FR ++D+  ARAVA M++LAE  +P ++V G  +A K    +EE+ ++E+A++ + + +    +   + P G  R   +  K + TP KYPR AGTP K PL
Sbjct:  128 RAEDFGQDKVFRAKFDIVTARAVARMQVLAELTIPFLKVNGRLIALKAAAAEEELISAEKALKTLFSQV--TVNKNYKLPNGDDRNITIVSKKKETPNKYPRKAGTPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRA1 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus agalactiae serotype Ia GN=rsmG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D  FR ++D+  ARAVA M++LAE  +P ++V G  +A K    +EE+ ++E+A++ + + +    +   + P G  R   +  K + TP KYPR AGTP K PL
Sbjct:  128 RAEDFGQDRVFRAKFDIVTARAVARMQVLAELTIPFLKVNGRLIALKAAAAEEELISAEKALKTLFSQV--TVNKNYKLPNGDDRNITIVSKKKETPNKYPRKAGTPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DEIDV (Ribosomal RNA small subunit methyltransferase G OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rsmG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +TL +    R++YD  V RAVA + ILAE  LP +R GGL VA KG    EE++  +RA   +G  + ++ +         RT VV  K R TP +YPR  G P + PL
Sbjct:  129 RAETLTRQPEHRDRYDRVVVRAVAALPILAELALPFLRPGGLLVAQKGPISPEELRAGQRAAGELGGRVTEVEAFTLPVLGDARTLVVVEKLRDTPDRYPRREGVPNQQPL 239          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRTD (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+D+  ARAVA M++L+E  +P ++VGG  +A K     +E+ ++  A+ ++ A    + +   + P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRAQFDIVTARAVARMQVLSELTIPFLKVGGQLIALKAAAADQELVDARNALNVLFAK--PILNENYKLPNGDGRNITIIDKKKETPNKYPRRAGIPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRT2 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+D+  ARAVA M++L+E  +P ++VGG  +A K     +E+ ++  A+ ++ A    + +   + P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRAQFDIVTARAVARMQVLSELTIPFLKVGGQLIALKAAAADQELVDARNALNVLFAK--PILNENYKLPNGDGRNITIIDKKKETPNKYPRRAGIPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRT1 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+D+  ARAVA M++L+E  +P ++VGG  +A K     +E+ ++  A+ ++ A    + +   + P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRAQFDIVTARAVARMQVLSELTIPFLKVGGQLIALKAAAADQELVDARNALNVLFAK--PILNENYKLPNGDGRNITIIDKKKETPNKYPRRAGIPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRPG (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+DV  ARAVA M++L+E  +P +++ G  +A K     +E++ ++ A+ L+   +++  S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIRGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRP8 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M18 GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D +FR Q+DV  ARAVA M++L+E  +P +++ G  +A K     +E++ ++ A+ L+   +++  S   Q P G  R   +  K + TP KYPR AG P K PL
Sbjct:  128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIRGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACLS (Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 37/112 (33.04%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +  G+D ++R  +D   ARAVA + +L+E+ +  ++  G  ++ K    +EE+ ++++A+ ++G   ++   +  + P G +R   V  K + TPKKYPR AGTPAK P+
Sbjct:  128 RAEDFGQDSNYRATFDFVTARAVARLSVLSEFTISFLKKNGNLLSLKAAQFEEELTDAKKAIAILGGKFIK--EIAYELPNGDERHIAVIEKKKETPKKYPRKAGTPAKSPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DICT6 (Ribosomal RNA small subunit methyltransferase G OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rsmG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + LGKD  +REQ+D+A+AR VA+  I+ EY LP V+ GG+F+     +   E +N+++ V ++G    +   +E       R  +   K   TP+KYPR  G P K PL
Sbjct:  130 RAENLGKDPRYREQFDLALARGVAKPNIVLEYALPFVKTGGIFLGQATPNNLSEWENAQKVVGILGGKTEE--KIEINFDNITRIFLKIRKINNTPEKYPRRPGIPEKRPL 238          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_STRA36.352e-1436.61Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRA18.296e-1436.61Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_DEIDV1.084e-1340.54Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRTD2.414e-1335.71Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRT22.414e-1335.71Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRT12.414e-1335.71Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRPG2.414e-1336.61Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_STRP82.414e-1336.61Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_LACLS2.414e-1333.04Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_DICT62.414e-1336.94Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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