FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRA3 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus agalactiae serotype III GN=rsmG PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D FR ++D+ ARAVA M++LAE +P ++V G +A K +EE+ ++E+A++ + + + + + P G R + K + TP KYPR AGTP K PL Sbjct: 128 RAEDFGQDKVFRAKFDIVTARAVARMQVLAELTIPFLKVNGRLIALKAAAAEEELISAEKALKTLFSQV--TVNKNYKLPNGDDRNITIVSKKKETPNKYPRKAGTPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRA1 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus agalactiae serotype Ia GN=rsmG PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14 Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D FR ++D+ ARAVA M++LAE +P ++V G +A K +EE+ ++E+A++ + + + + + P G R + K + TP KYPR AGTP K PL Sbjct: 128 RAEDFGQDRVFRAKFDIVTARAVARMQVLAELTIPFLKVNGRLIALKAAAAEEELISAEKALKTLFSQV--TVNKNYKLPNGDDRNITIVSKKKETPNKYPRKAGTPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DEIDV (Ribosomal RNA small subunit methyltransferase G OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rsmG PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13 Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +TL + R++YD V RAVA + ILAE LP +R GGL VA KG EE++ +RA +G + ++ + RT VV K R TP +YPR G P + PL Sbjct: 129 RAETLTRQPEHRDRYDRVVVRAVAALPILAELALPFLRPGGLLVAQKGPISPEELRAGQRAAGELGGRVTEVEAFTLPVLGDARTLVVVEKLRDTPDRYPRREGVPNQQPL 239
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRTD (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D +FR Q+D+ ARAVA M++L+E +P ++VGG +A K +E+ ++ A+ ++ A + + + P G R + K + TP KYPR AG P K PL Sbjct: 128 RAEDFGQDKAFRAQFDIVTARAVARMQVLSELTIPFLKVGGQLIALKAAAADQELVDARNALNVLFAK--PILNENYKLPNGDGRNITIIDKKKETPNKYPRRAGIPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRT2 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D +FR Q+D+ ARAVA M++L+E +P ++VGG +A K +E+ ++ A+ ++ A + + + P G R + K + TP KYPR AG P K PL Sbjct: 128 RAEDFGQDKAFRAQFDIVTARAVARMQVLSELTIPFLKVGGQLIALKAAAADQELVDARNALNVLFAK--PILNENYKLPNGDGRNITIIDKKKETPNKYPRRAGIPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRT1 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D +FR Q+D+ ARAVA M++L+E +P ++VGG +A K +E+ ++ A+ ++ A + + + P G R + K + TP KYPR AG P K PL Sbjct: 128 RAEDFGQDKAFRAQFDIVTARAVARMQVLSELTIPFLKVGGQLIALKAAAADQELVDARNALNVLFAK--PILNENYKLPNGDGRNITIIDKKKETPNKYPRRAGIPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRPG (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D +FR Q+DV ARAVA M++L+E +P +++ G +A K +E++ ++ A+ L+ +++ S Q P G R + K + TP KYPR AG P K PL Sbjct: 128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIRGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_STRP8 (Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M18 GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D +FR Q+DV ARAVA M++L+E +P +++ G +A K +E++ ++ A+ L+ +++ S Q P G R + K + TP KYPR AG P K PL Sbjct: 128 RAEDFGQDKAFRGQFDVVTARAVARMQVLSELTIPFLKIRGKLIALKAQAADQELEEAKNALCLLFGKVIKNHSY--QLPNGDSRFITIVEKKKETPNKYPRKAGLPNKKPL 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_LACLS (Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 37/112 (33.04%), Postives = 67/112 (59.82%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + G+D ++R +D ARAVA + +L+E+ + ++ G ++ K +EE+ ++++A+ ++G ++ + + P G +R V K + TPKKYPR AGTPAK P+ Sbjct: 128 RAEDFGQDSNYRATFDFVTARAVARLSVLSEFTISFLKKNGNLLSLKAAQFEEELTDAKKAIAILGGKFIK--EIAYELPNGDERHIAVIEKKKETPKKYPRKAGTPAKSPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_DICT6 (Ribosomal RNA small subunit methyltransferase G OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rsmG PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + LGKD +REQ+D+A+AR VA+ I+ EY LP V+ GG+F+ + E +N+++ V ++G + +E R + K TP+KYPR G P K PL Sbjct: 130 RAENLGKDPRYREQFDLALARGVAKPNIVLEYALPFVKTGGIFLGQATPNNLSEWENAQKVVGILGGKTEE--KIEINFDNITRIFLKIRKINNTPEKYPRRPGIPEKRPL 238 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |