FC871388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ACAM1 (Ribosomal RNA small subunit methyltransferase G OS=Acaryochloris marina (strain MBIC 11017) GN=rsmG PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + LG+ +RE +D+AV RAV + AEY LPL+ + G V +G EE + A +G L+ + V+ G R + K + T K+PR G PA+ PL Sbjct: 146 RAENLGQQSPYRESFDLAVIRAVGPASVCAEYALPLLALQGYAVLYRGQWTAEEQEGLVAATSKLGGELIAVSPVKMPHSQGIRHCIYLRKIKTTDPKFPRRVGVPARKPL 256
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_SYNWW (Ribosomal RNA small subunit methyltransferase G OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rsmG PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1 Query: 73 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R +D RA+A M I+ EY LPL+R+GG + KG + E++ + A+ ++G ++ + + + R VV K R TP KYPR G PAK PL Sbjct: 116 RNSFDFCSCRALAMMNIVLEYGLPLLRLGGKLLLWKGKNYSREIEQAANALDILGGKVVDIFTYSLMAE-RDRAIVVVEKERDTPAKYPRRVGIPAKRPL 214
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_OENOB (Ribosomal RNA small subunit methyltransferase G OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rsmG PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 R + ++++RE+YD A+ARAV+ L E LP V+VGG + K + E+ + +A++ +G + Q S E + R + K T K+YPR AG P K P+ Sbjct: 128 RAEDFAHNLNYREKYDFAIARAVSNTNTLLELLLPFVKVGGKIILMKTVHVESEIYGASKALEELGGRVSQSFSFELPND-DPRVLITIDKISSTKKRYPRKAGVPEKSPI 237
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_FUSNN (Ribosomal RNA small subunit methyltransferase G OS=Fusobacterium nucleatum subsp. nucleatum GN=rsmG PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11 Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 73 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ--RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372 RE+YDV + R V+ + ++ EY +P ++V G F+ K G D E+KNS A++++ + +L+ E + PF R + LK+++T +KYPR G P K PL Sbjct: 134 REKYDVGLCRGVSNLSVILEYEIPFLKVNGRFLPQKMIGTD---EIKNSSNALKILNSKILK--EYEFKLPFSNEDRLVIEILKTKKTDEKYPRKIGIPLKKPL 232 The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bpback to top |