FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_ACAM1 (Ribosomal RNA small subunit methyltransferase G OS=Acaryochloris marina (strain MBIC 11017) GN=rsmG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + LG+   +RE +D+AV RAV    + AEY LPL+ + G  V  +G    EE +    A   +G  L+ +  V+     G R  +   K + T  K+PR  G PA+ PL
Sbjct:  146 RAENLGQQSPYRESFDLAVIRAVGPASVCAEYALPLLALQGYAVLYRGQWTAEEQEGLVAATSKLGGELIAVSPVKMPHSQGIRHCIYLRKIKTTDPKFPRRVGVPARKPL 256          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_SYNWW (Ribosomal RNA small subunit methyltransferase G OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rsmG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   73 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R  +D    RA+A M I+ EY LPL+R+GG  +  KG +   E++ +  A+ ++G  ++ + +    +    R  VV  K R TP KYPR  G PAK PL
Sbjct:  116 RNSFDFCSCRALAMMNIVLEYGLPLLRLGGKLLLWKGKNYSREIEQAANALDILGGKVVDIFTYSLMAE-RDRAIVVVEKERDTPAKYPRRVGIPAKRPL 214          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_OENOB (Ribosomal RNA small subunit methyltransferase G OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +    ++++RE+YD A+ARAV+    L E  LP V+VGG  +  K    + E+  + +A++ +G  + Q  S E  +    R  +   K   T K+YPR AG P K P+
Sbjct:  128 RAEDFAHNLNYREKYDFAIARAVSNTNTLLELLLPFVKVGGKIILMKTVHVESEIYGASKALEELGGRVSQSFSFELPND-DPRVLITIDKISSTKKRYPRKAGVPEKSPI 237          
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_FUSNN (Ribosomal RNA small subunit methyltransferase G OS=Fusobacterium nucleatum subsp. nucleatum GN=rsmG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   73 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ--RTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            RE+YDV + R V+ + ++ EY +P ++V G F+  K  G D   E+KNS  A++++ + +L+    E + PF    R  +  LK+++T +KYPR  G P K PL
Sbjct:  134 REKYDVGLCRGVSNLSVILEYEIPFLKVNGRFLPQKMIGTD---EIKNSSNALKILNSKILK--EYEFKLPFSNEDRLVIEILKTKKTDEKYPRKIGIPLKKPL 232          
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_ACAM12.259e-1134.23Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_SYNWW2.951e-1137.00Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_OENOB3.854e-1133.33Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_FUSNN5.033e-1136.54Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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